Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01764 ATGTGTAAGAAGGAAATGTCTGATTTTTTTTGTTTGTTTTGTTATGTGTGTTTAGGAAAAATGGCTCTCATTGGGTTGCTCTTGATGGGTTTTCTCACAATGTTCTCCTCTGCTCATGCCTATGGTGGAGGGTGGACTAATGCTCATGCCACCTTCTATGGAGGGAGTGATGCATCTGGGACAATGGGTGGGGCATGTGGGTATGGGAACCTCTACAGCCAAGGGTATGGAACAAACACTGCTGCTCTGAGCACTGCACTGTTCAACAATGGCTTGAGCTGTGGCTCTTGCTATGAGATTAGGTGTGCCAATGACCACAGGTGGTGCCTTCCTGGCTCCATTGTGGTCACTGCCACCAATTTCTGTCCACCAAACAATGCCTTACCCAACAACAATGGTGGCTGGTGCAACCCTCCTCTCCAACACTTTGATCTCGCTCAACCTGTCTTCCTACGCATTGCTCAATACAAAGCTGGAATTGTCCCTGTATCCTTCAGAAGGGTGCCCTGCAGTAGAAAGGGAGGGATAAGGTTCACCATCAATGGACACTCCTACTTCAACCTAGTTCTCATCACAAATGTTGGTGGTGCTGGTGATGTGCATGCTGTTTCCATCAAAGGCTCAAGGACTGGTTGGATGCCAATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACAACTACCTGAATGGCCAAAGCCTCTCCTTCAAGGTCACCACAAGTGATGGCAGAACTGTGGTGTCCTCCAATGTTGCCCCTGCTGGTTGGTCCTTTGGCCAAACCTACACTGGTGCTCAAATCCACTAG 807 0.4895 MCKKEMSDFFCLFCYVCLGKMALIGLLLMGFLTMFSSAHAYGGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCANDHRWCLPGSIVVTATNFCPPNNALPNNNGGWCNPPLQHFDLAQPVFLRIAQYKAGIVPVSFRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSSNVAPAGWSFGQTYTGAQIH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01764 268 Gene3D - 174 267 IPR036749 -
Pumo1g01764 268 FunFam Expansin 34 171 - -
Pumo1g01764 268 FunFam Expansin 175 267 - -
Pumo1g01764 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 264 IPR007117 -
Pumo1g01764 268 PRINTS Expansin signature 133 150 IPR002963 GO:0009664
Pumo1g01764 268 PRINTS Expansin signature 150 163 IPR002963 GO:0009664
Pumo1g01764 268 PRINTS Expansin signature 114 124 IPR002963 GO:0009664
Pumo1g01764 268 PRINTS Expansin signature 102 113 IPR002963 GO:0009664
Pumo1g01764 268 PRINTS Expansin signature 75 89 IPR002963 GO:0009664
Pumo1g01764 268 PRINTS Expansin signature 221 242 IPR002963 GO:0009664
Pumo1g01764 268 PRINTS Expansin signature 250 266 IPR002963 GO:0009664
Pumo1g01764 268 PRINTS Expansin signature 186 207 IPR002963 GO:0009664
Pumo1g01764 268 PRINTS Expansin signature 174 186 IPR002963 GO:0009664
Pumo1g01764 268 SUPERFAMILY PHL pollen allergen 172 264 IPR036749 -
Pumo1g01764 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 175 IPR007112 -
Pumo1g01764 268 SUPERFAMILY Barwin-like endoglucanases 44 193 IPR036908 -
Pumo1g01764 268 Pfam Lytic transglycolase 80 165 IPR009009 -
Pumo1g01764 268 Gene3D - 32 171 IPR036908 -
Pumo1g01764 268 CDD DPBB_EXPA_N 44 170 - -
Pumo1g01764 268 SMART dpbb_1 80 165 IPR007112 -
Pumo1g01764 268 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Pumo1g01764 268 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Pumo1g01764 268 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576
Pumo1g01764 268 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Pumo1g01764 268 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Pumo1g01764 268 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Pumo1g01764 268 Pfam Expansin C-terminal domain 176 253 IPR007117 -
Pumo1g01764 268 PANTHER EXPANSIN-A15 27 266 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01764 Pumo-Chr1 29886483 29889356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01764 18 268 Expansin Gene Family AT2G03090 80.080 4.41e-154 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01764 - - gmx:100527059 499.975