Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01758 ATGGATCTGCAAAATGTGCAAAACCAAAGCATGCGTTTGGTTCTGTCCACTGATGCCAAGCCTAGGCTGAAATGGACTCCTGAGCTTCACCAACGGTTCACTGAGGCTATTAATCAGCTTGGAGGTGCAGAAAAGGCAACTCCAAAGAACCTTATGAGAGTGATGGGGATTCCAGGGCTCACTTTGTACCACCTCAAGAGCCATTTACAGAAATATAGGCTTGGGAAAAGCCAACCGCTAGAAACCTGCTCTGACAACAAGCAACAAGGTTACAGTGAAATCCAGAGCAGTGATGGTCATTGCAGCAAGGAAATCAGCATTGGGACCCAGAATCAGATGACTGAAAGCTTGAAGATTGCTGAGGCTCTCCAAATGCAAATGGAAGTACAAAGGAAACAAATTGAGGTCCAAAAACATTTGCAGCTTCGAATTGAAGCTCAAGGGAAGTACTTACAATCAGTACTAACAAAGGCACATGAAGCACTTGCAAGATACAATTCGTCCACAACTGGTATAGAACATGCAAAAGCTGAACTTTCTCAGTTAGTGTCAATAATCAACAATGCATGTCCAAGCTCTCCTCCCATTTCAGAAATGACAGAAACAAGAGGGCTCAGTTTGAACTGTGCAGAGAGGAAACAGGACAGAGGAACCATGTGTTCACTTGAAAGCTCTTTGACATCATCTGAGAGCTCTGGGGGAACAGAAGAAAAACAACCAATGGATGAGGCAGAGAACCCTCAAAAGTTTAATGGTGTTTCAGTTGAATTGCCATTGATGGCTGCATTCACGGGAGATACTAGTGATGGGAGAAAGAGAAGTGCAGAAACTGATTCTGATTGTGTTGATCAACCTTGTGGAAAAAGATGTGGCAACAAGTTGAGGGAATCTGAAGTGTCAGAAATAATGCTTGACTTGAACAGCCAATATCACAGAGACATTGACTCAAGTGTCAAAGGGATAGATTTAAATTTCAGTTCAAGCTTTTAG 990 0.4283 MDLQNVQNQSMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGAEKATPKNLMRVMGIPGLTLYHLKSHLQKYRLGKSQPLETCSDNKQQGYSEIQSSDGHCSKEISIGTQNQMTESLKIAEALQMQMEVQRKQIEVQKHLQLRIEAQGKYLQSVLTKAHEALARYNSSTTGIEHAKAELSQLVSIINNACPSSPPISEMTETRGLSLNCAERKQDRGTMCSLESSLTSSESSGGTEEKQPMDEAENPQKFNGVSVELPLMAAFTGDTSDGRKRSAETDSDCVDQPCGKRCGNKLRESEVSEIMLDLNSQYHRDIDSSVKGIDLNFSSSF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01758 329 Gene3D - 19 77 - -
Pumo1g01758 329 Pfam MYB-CC type transfactor, LHEQLE motif 118 160 IPR025756 -
Pumo1g01758 329 Pfam Myb-like DNA-binding domain 22 73 IPR001005 -
Pumo1g01758 329 MobiDBLite consensus disorder prediction 216 246 - -
Pumo1g01758 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 252 IPR044848 GO:0003700
Pumo1g01758 329 FunFam Myb family transcription factor 19 77 - -
Pumo1g01758 329 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Pumo1g01758 329 MobiDBLite consensus disorder prediction 219 235 - -
Pumo1g01758 329 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01758 Pumo-Chr1 29705988 29708186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01758 11 326 G2-like Transcription Factor Family AT1G69580 47.273 1.13e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo1g01758 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01758 - - gmx:100805252 525.398