Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01750 ATGAAGGCATGGCCAGCAAGTGTTATATACCCTTCACAAGAAAACTTAACTGGATACCCTTCTTCTTCTTCCTACTCTTCTTCTCCTCCTTCAATGGGAATGGTCTATGCTGACATGGATTCACTCTCTCTTTGTTCAAACTACGGTGTGGTTTCTTCTCATCATCAAGATTGCTATGTCTCCAACGGGGGCACAAACTGGGGCTTGCCCTTCATGAGGGAATGCCTTGGGAGGAACAACTTTGAGGAGGAACACCCCAACAACAGTGATGATGCGGTGGAAGAAGAGGGTAAAGGCTCTGATAGCAGTGATGATGGGGGTGGTGAAGACAGTGACAAAGTTAACCATAATGCTAATAACTTTAACGAAGAGAACCCTAATGAGAATTCTAATAGTGGTGGCTCCGGGCACTCCAAGCTCTGTGCAAGAGGGCATTGGAGACCTGCAGAAGATTCCAAGCTCAAGGAGCTTGTTGCTCTCTATGGCCCTCAGAACTGGAACCTCATAGCTGAGAAGTTAGAAGGAAGATCAGGTAAGAGTTGTAGGCTGAGGTGGTTCAACCAGTTGGATCCAAGGATCAATAGGAGAGCATTCAGTGAAGAGGAGGAAGAGAGGCTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGAAAGTACAGAGAACAGTCCAGTGCCTACAGGAGGAGGAGGCTGAGCCAATCTGTTTACAGAAGAGTGGAGGAGAACACAGCAAGCAGCATTGTCTCAAGAGACAACACAGCCACTGCAGGGACAGAACAACAGCCACCACCACCACCACCCTATTGTCTCAATAATCTCCCAAATGGAGGACTTGCCAACAACAACATGATGCCTAGTTTCCCATATGCTGCTGCTGCACCCTTCCATGGAGTAGTGGCTGCTGCTCCTTCTGGTGGGGTTGAGTTTGGCTTATTAAATGCCTCACCCCACATGGCTGCTTCCAAAGAAGCAATCTCAACCACCAAGCTGGCCCCTCCCCATATTGCCTTGTATCCTCAACAAACACCACTTGATTTCTTTTCAGGTGGTGTTAGAAGCAATGAGATGGTAGGAGAGTCTTATTTTGGCCAGAACCATCGGCAGCAACCATCTGGTTTCTACCCTCAATACCCCCAATATCTGATGCTAATGCAGCAGCAGCACCAACAAAATAACAATTTTTACAGTTTCTCAAATTCCACAGCACAGATATTGGGCAGTGAAGCCTCACTATCATCAGTGGCAGCAGAACACAGAGATCAAGCCTTGAGCAGTGACCACCACACCCCAGATGCTGCAATTCCACCTCCATTTATTGACTTCCTTGGAGTAGGAGCCACATGA 1419 0.4736 MKAWPASVIYPSQENLTGYPSSSSYSSSPPSMGMVYADMDSLSLCSNYGVVSSHHQDCYVSNGGTNWGLPFMRECLGRNNFEEEHPNNSDDAVEEEGKGSDSSDDGGGEDSDKVNHNANNFNEENPNENSNSGGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRVEENTASSIVSRDNTATAGTEQQPPPPPPYCLNNLPNGGLANNNMMPSFPYAAAAPFHGVVAAAPSGGVEFGLLNASPHMAASKEAISTTKLAPPHIALYPQQTPLDFFSGGVRSNEMVGESYFGQNHRQQPSGFYPQYPQYLMLMQQQHQQNNNFYSFSNSTAQILGSEASLSSVAAEHRDQALSSDHHTPDAAIPPPFIDFLGVGAT 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01750 472 CDD SANT 197 237 IPR001005 -
Pumo1g01750 472 Gene3D - 143 194 - -
Pumo1g01750 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 244 IPR017930 -
Pumo1g01750 472 MobiDBLite consensus disorder prediction 81 112 - -
Pumo1g01750 472 SUPERFAMILY Homeodomain-like 143 236 IPR009057 -
Pumo1g01750 472 ProSiteProfiles Myb-like domain profile. 143 189 IPR001005 -
Pumo1g01750 472 Gene3D - 196 267 - -
Pumo1g01750 472 MobiDBLite consensus disorder prediction 267 292 - -
Pumo1g01750 472 FunFam MYB transcription factor 143 194 - -
Pumo1g01750 472 SMART sant 142 191 IPR001005 -
Pumo1g01750 472 SMART sant 194 242 IPR001005 -
Pumo1g01750 472 Pfam Myb-like DNA-binding domain 195 238 IPR001005 -
Pumo1g01750 472 Pfam Myb-like DNA-binding domain 143 189 IPR001005 -
Pumo1g01750 472 FunFam MYB transcription factor 196 268 - -
Pumo1g01750 472 ProSiteProfiles Myb-like domain profile. 190 240 IPR001005 -
Pumo1g01750 472 MobiDBLite consensus disorder prediction 113 137 - -
Pumo1g01750 472 MobiDBLite consensus disorder prediction 81 142 - -
Pumo1g01750 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 143 189 IPR017930 -
Pumo1g01750 472 PANTHER MYB PROTEIN-RELATED 130 292 - -
Pumo1g01750 472 MobiDBLite consensus disorder prediction 267 283 - -
Pumo1g01750 472 CDD SANT 146 187 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01750 Pumo-Chr1 29588980 29590835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01750 112 260 MYB Transcription Factor Family AT1G69560 73.510 9.92e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo1g01750 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01750 K09422 - gmx:100804537 588.186