Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01749 ATGGGAAGGGTAAAGCTAAAGATAAAAAGGTTGGAAAACACCAATGGCCGCCAAGCAACATATGCTAAAAGGAAAAATGGAATTATGAAAAAAGCTGCTGAATTGTCTATATTGTGTGATATAGATATTATACTTCTCATGTTTGCACCAAATGGAAAGCCTTCATTGTGTAGGGGGAGACGCAGTAACTTAGAGGAGGTTATTGCAAAATTCGCTCAACTAACTCCTCAAGAAAGGGCAAAAAGGAAGTTAGAGACTCTTGAAGCTCTGAAGAAAACATTTAAGAAGTTAGATCATGATGTAAACATACAAGAATTTCTGGGTACAAGTAATCAAGCCAGGCTATTACAAACTCGAATTTCTGAAACTCATAAGAGATTAAGTCATTGGACTGAGTTTGATAAAATAAGCAGTGTGGATCAACTAGGACAGATGGAAAATTCACTCAGGGAGTCACTTAATCAAATTCGAACCCGTAAGGAAAATATAAAAAAGCAGCAACAACTTGTGTCGCTGCAATGCAATAACCAGTTCAATGAAATGAATATTCCCTTCAGAATGAGTGCAGAGCAGCATCTCCAACCTCTGTCATGGATTGCCAATGGTGACAGCCAAAATATAGTTTTACCTGAGGACTCAAACATGTTTCTCCACAAAGATGTAGAGGGATCTGCAAGTTCATCTTTTGGTAGTTATGCCAGCTATCTTGGTTCAAGTATCAAGACCGAGATGTCTAACTCAACACAAGAAAATGGGGTCCTTAGTGACATGAGCAATACTGCCCCAATGAGGCTACAATTGAATGGGCAGTTTCCATACCTGCCATACAATTTTAATTTACTGAACAATTTGAAGTTTCAACCAACTGCAGAGATCAATCCACATGAAAATCCTATAGATTATCATGTGAATGGAAGCTTTGAAGCACCTAGATCTGGTTATGACTCTAATAATCATCATGGTTGGGCTTCCACATCAGGGCCTTGTGGTGTTACTATGTTTGATGAGCAATTATATGCCCAGGCAAGCTCCACTAAAGTGAACTTTGGCTTCACATAG 1059 0.3872 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGKPSLCRGRRSNLEEVIAKFAQLTPQERAKRKLETLEALKKTFKKLDHDVNIQEFLGTSNQARLLQTRISETHKRLSHWTEFDKISSVDQLGQMENSLRESLNQIRTRKENIKKQQQLVSLQCNNQFNEMNIPFRMSAEQHLQPLSWIANGDSQNIVLPEDSNMFLHKDVEGSASSSFGSYASYLGSSIKTEMSNSTQENGVLSDMSNTAPMRLQLNGQFPYLPYNFNLLNNLKFQPTAEINPHENPIDYHVNGSFEAPRSGYDSNNHHGWASTSGPCGVTMFDEQLYAQASSTKVNFGFT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01749 352 Coils Coil 77 97 - -
Pumo1g01749 352 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Pumo1g01749 352 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Pumo1g01749 352 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo1g01749 352 CDD MADS 2 54 - -
Pumo1g01749 352 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Pumo1g01749 352 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo1g01749 352 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo1g01749 352 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo1g01749 352 Coils Coil 146 166 - -
Pumo1g01749 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Pumo1g01749 352 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Pumo1g01749 352 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01749 Pumo-Chr1 29552136 29558447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01749 1 341 Type I MADS-box Gene Family AT2G03060 49.206 1.97e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo1g01749 SRF-TF 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01749 - - gmx:100811701 626.706