Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01745 ATGGTTATGGAGGGTAGCACTGGCTCTGAACTACCACCTGGTTTTAGGTTTCACCCAACTGATGAGGAACTAATTGTGTACTACCTTTGCAACCAAGCCACATCAAAGCCATGCCCTGCATCTATCATCCCAGAAGTGGATCTCTATAAGTTTGATCCATGGGAATTGCCAGATAAAACAGAATTTGGAGAAAATGAATGGTATTTCTTTAGTCCAAGAGACAGGAAGTACCCAAATGGGGTGAGGCCTAACCGTGCAACACTGTCTGGGTATTGGAAGGCTACTGGCACAGACAAGGCAATCTATAGTGAATCAAAGCATGTTGGGTTGAAGAAATCTTTAGTCTTTTACAAGGGTAGGCCACCAAAGGGTATCAAAACTGATTGGATCATGCATGAGTATAGATTGGCTGAATCAAAGAAACCAGCTAGCAGGAAAATTCGGTCCATGAGGTTGGATGACTGGGTCTTGTGCAGGATCTATAAGAAGAAGAACATGGGAAAAGCATTGGAGCACAAAGAGGCACACCCAAAAGTCCAAATTGCTAATCTTGCAGCTGCAAATAATCATGATGGTGAACAGAAAATGATGAACCTTCCTAGGACTTGGTCCCTTACTTACCTTTTGGATATGAATTACTTGGGTCCAATTTTATCTGATGGCTCCTATTGCTCAACCTTAGATTTTCAAATTAACACTGCCAATATTGGATTAGACCCTTTTGTAAAATCTCAACCGGTTGAAATGACCAACAATTATGTAGCAGATTCAGAGAAGTATCAAGTGAAACAGAGTAGTACTATTGACCAGCCCATATATGTGAAACAAATGTATGACATGCTAGGATAA 849 0.4099 MVMEGSTGSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDLYKFDPWELPDKTEFGENEWYFFSPRDRKYPNGVRPNRATLSGYWKATGTDKAIYSESKHVGLKKSLVFYKGRPPKGIKTDWIMHEYRLAESKKPASRKIRSMRLDDWVLCRIYKKKNMGKALEHKEAHPKVQIANLAAANNHDGEQKMMNLPRTWSLTYLLDMNYLGPILSDGSYCSTLDFQINTANIGLDPFVKSQPVEMTNNYVADSEKYQVKQSSTIDQPIYVKQMYDMLG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01745 282 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 225 - -
Pumo1g01745 282 Pfam No apical meristem (NAM) protein 12 136 IPR003441 GO:0003677|GO:0006355
Pumo1g01745 282 ProSiteProfiles NAC domain profile. 11 163 IPR003441 GO:0003677|GO:0006355
Pumo1g01745 282 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Pumo1g01745 282 FunFam NAC transcription factor 20 167 - -
Pumo1g01745 282 SUPERFAMILY NAC domain 7 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01745 Pumo-Chr1 29472627 29474158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01745 3 217 NAC Transcription Factor Family AT1G69490 65.778 1.15e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo1g01745 NAM 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01745 - - gmx:100785110 523.087