Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01744 ATGGCAGCAGCAGAAGAAGAAGAGCACTTGCATTTGCAACTTCTCAGATCCAAAGCCACAGAGCTTTTCCTCAGAGAAGAATGGAACGCTTCAATCGAAGCCTATTCCCACTTCATCACCCTCTGCACCCAAAGCCTCTCCCATTCTCACACTCACCCTCACCCAAACCAAAAGCTTCTTCGAAGATCCCTCTGCATAGCCCTATGCAACCGCGCAGAAGCGAGGTCCAAACTGAAAGACTATCACTGCGCCCTTCGAGACTGTAACCACGCTTTGGAGCTCGACGCGGCACATTCGAAGACCCTTTTGTGCAAAGGTAAGATCTTGCTCTGCCTCAGCAGGTATTCTTCCGCTCTCGAGTGTTTCAAAGGCGCTGCGATCGATGATGGGAATGCTGAAAGCGTAGGTGGGTACTTGGAGAGGTGCAAGAGTTTGGAGCATTTGTCGAGAACGGGGTGCTTGGACCTCTCGGATTGGGTCTCAAACGGGTTAAGAGGGAAGGTTCCGGAGCTCGCGGAACACGTCGGTGCTGTGGAGATTAGAAAGTCTGAGATCAGCGGGAGAGGGTTGTTTGTGACAAAGAATGTTGAGTCTGGGTCGTTGATTTTGGTGACCAAGGCGGTTGCCATGGAGAGGAGCATCATAATGGGAGGGGTTCAGGATCTGAGTGAGGATGCACAGCTGGCAATGTGGAGGAGTTTCATTGACAAGGTTTGTGACATTGTTGGGAAGTGTCACAAGACAAAGGGTTTGGTGAATAGGTTGTCTTGTGGGGAGAATGAGGATGAGCTTGAGGTGCTTGATGTGGGGCTCTTTAGGCCCGAGAGTAGTAGTGTGGAGAAGAATGATGATGGGGTTGATGTTGGTGTGGATATGGTTAAGTTGGTTAGTGTATTGGATGTGAATTCTCTCACTGAGGATGCTGTTTCAGCCAATGTGTTGAGGAAGGGAAATGATTGTTATGGTGTTGGGTTGTGGTTGCTACCTTCCTTTGTGAACCACTCTTGTTGCCCCAATGCAAGGAGGTTGCATGTTGGGGACTACTTGGTGGTTCATGCTTCCAAGGATTTGAAGGCTGGTGAGGAGGTTACTTTTGCTTATCTTGACCCTTTGTGTGGTTTGAGCAAGAGGAAGGAGATGTCAGTGAATTGGGGGATTCATTGCAAGTGCAAGAGGTGCAGGTTTGAGGGGGAGGTGTTCTCCAAGCAAGAGATAAGGGAGATTGAGATTGGTCTTGAGAGAGGGATGGATGTGGGGGGTGTGGTGTACAAGTTGGAGGAGCAAATGAAGAGAATGAAGGTTAGGGGAAAGGAGAAAGGGTACTTGAGGGCTTCATTTTGGGAAGCATATTCTGAGGTTTATAGGTCTGAGAGGGCCATGAAGAGGTGGGGGAGGAGGATTCCTACAGTGGAGGCTGTGGTTGATAGCATCAGTGATGTGGTGGGAGGGGATCACAGGCTGCTCAGGATGATGGTGGAGGAGTTGAAGAAAAATGGTGGTGGAGTTGTTGAGAGGGAGAAGGTTTTCAAGATGGCAAGAGATGTGTTTGGGAAGGTGGTGAAAAAGCAAGCAATGAAGACACTTCTTGAACTCTGCATTGCTGATTGA 1608 0.4925 MAAAEEEEHLHLQLLRSKATELFLREEWNASIEAYSHFITLCTQSLSHSHTHPHPNQKLLRRSLCIALCNRAEARSKLKDYHCALRDCNHALELDAAHSKTLLCKGKILLCLSRYSSALECFKGAAIDDGNAESVGGYLERCKSLEHLSRTGCLDLSDWVSNGLRGKVPELAEHVGAVEIRKSEISGRGLFVTKNVESGSLILVTKAVAMERSIIMGGVQDLSEDAQLAMWRSFIDKVCDIVGKCHKTKGLVNRLSCGENEDELEVLDVGLFRPESSSVEKNDDGVDVGVDMVKLVSVLDVNSLTEDAVSANVLRKGNDCYGVGLWLLPSFVNHSCCPNARRLHVGDYLVVHASKDLKAGEEVTFAYLDPLCGLSKRKEMSVNWGIHCKCKRCRFEGEVFSKQEIREIEIGLERGMDVGGVVYKLEEQMKRMKVRGKEKGYLRASFWEAYSEVYRSERAMKRWGRRIPTVEAVVDSISDVVGGDHRLLRMMVEELKKNGGGVVEREKVFKMARDVFGKVVKKQAMKTLLELCIAD 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01744 535 SUPERFAMILY SET domain 177 393 IPR046341 -
Pumo1g01744 535 Pfam SET domain 187 367 IPR001214 GO:0005515
Pumo1g01744 535 SMART tpr_5 65 98 IPR019734 GO:0005515
Pumo1g01744 535 SMART tpr_5 12 45 IPR019734 GO:0005515
Pumo1g01744 535 SMART tpr_5 99 131 IPR019734 GO:0005515
Pumo1g01744 535 SUPERFAMILY TPR-like 12 126 IPR011990 GO:0005515
Pumo1g01744 535 SMART set_7 176 374 IPR001214 GO:0005515
Pumo1g01744 535 Gene3D SET domain 289 397 IPR046341 -
Pumo1g01744 535 CDD SET_SMYD 314 393 - -
Pumo1g01744 535 Gene3D Tetratricopeptide repeat domain 2 150 IPR011990 GO:0005515
Pumo1g01744 535 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 12 529 - -
Pumo1g01744 535 ProSiteProfiles SET domain profile. 176 368 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01744 Pumo-Chr1 29458071 29459916 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo1g01744 SET 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01744 - - gmx:100812233 904.434