Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01743 ATGGGTAGGTCACCATGCTGTGAAAAAGTTGGCTTGAAGAAAGGGCCATGGACTCCAGAGGAAGACCAAAAGCTCATGGCTTATATCGATGAGTTTGGCCACGGAAGCTGGCGTGCTTTGCCTGCCAAAGCAGGACTTCAAAGATGTGGGAAGAGCTGCAGGCTAAGGTGGACTAACTACCTCAGACCAGACATAAAAAGAGGAAAGTTCAGCTTGCAGGAGGAGCAAACAATCATTCAACTCCATGCCCTTCTTGGGAATAGATGGTCAGCCATAGCAGCTCAACTTCCCAAGAGAACTGACAACGAGATCAAGAACTATTGGAACACACATCTGAAGAAGAGGCTAACCCGAATGGGGATAGACCCCACCACCCACAAGCCGAAAACCGACGCACTCGGTGGCTCGGGTGGTGGCCAAGCCAAGGACTCAGCCAACCTTAGCCACATGGCGCAGTGGGAGAGTGCTAGGCTCGAAGCCGAAGCAAGACTCGTGAGAGAATCAAAGTTGCAAGTGAACAACAACAACCTCGGATCCTGCTCCAACAACACACAACCCGCGAGACTCGTCCTCAACAAGATCACAACACAACAACAACCCTCACTTCCACCGTGCCTCGACATCCTCAAAGCATGGCAAAGCTCATGGTCCAAACCACCACAACCAACAACAACAACAAAAGAAAACAACACCAAAATCATGCATAGCATGTATGCCATGATGCTATCAACTGATGACAGTACTCTAGAGTCTCCAACATCCACGTTGTGCTTCCCAGGAACAACAACAACAATGCTTCCTGTCTCCAACAACATTGGAGTACTGTTCAATGAAAACAACAACAACAACAACATGCTTCCTCTCGCCACAATCGTCGACGATGGCGGGTTCATGAAAGACAACACCGCCACAATGTTGCATTTACAAGACGATGATATTATGGCAGCGGTGGAAGCATTTAGAGCCACCACCACAGGGTACGACGACAACAGCAGTAGGATCAAATACAATAATAATAATGCTGTTCATCCCTCACTCTCCAACAGTGTGGTGATCCTCGAAGGACTCGATGACGACGACAACAACAATGATAACAATAATAATAATAATGCATTGGTTGTTTATGACTCCAACGTTAACTTGGGCACGGAGGAAGAGAACCTGGCAATCATCAACGGGGATGGAAGCCTCTGCAACGTGAACCTCGATGAGAATAATAAGCATTACTGGAATAACATATTCAATTTGGTGAATGATCCCTCTGTCTTCTGA 1272 0.4725 MGRSPCCEKVGLKKGPWTPEEDQKLMAYIDEFGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDALGGSGGGQAKDSANLSHMAQWESARLEAEARLVRESKLQVNNNNLGSCSNNTQPARLVLNKITTQQQPSLPPCLDILKAWQSSWSKPPQPTTTTKENNTKIMHSMYAMMLSTDDSTLESPTSTLCFPGTTTTMLPVSNNIGVLFNENNNNNNMLPLATIVDDGGFMKDNTATMLHLQDDDIMAAVEAFRATTTGYDDNSSRIKYNNNNAVHPSLSNSVVILEGLDDDDNNNDNNNNNNALVVYDSNVNLGTEEENLAIINGDGSLCNVNLDENNKHYWNNIFNLVNDPSVF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01743 423 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo1g01743 423 CDD SANT 69 112 IPR001005 -
Pumo1g01743 423 FunFam MYB-related transcription factor 13 66 - -
Pumo1g01743 423 CDD SANT 16 61 IPR001005 -
Pumo1g01743 423 SMART sant 66 114 IPR001005 -
Pumo1g01743 423 SMART sant 13 63 IPR001005 -
Pumo1g01743 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo1g01743 423 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo1g01743 423 Gene3D - 69 116 - -
Pumo1g01743 423 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo1g01743 423 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 229 - -
Pumo1g01743 423 Gene3D - 11 67 - -
Pumo1g01743 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo1g01743 423 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo1g01743 423 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo1g01743 423 FunFam MYB transcription factor 68 129 - -
Pumo1g01743 423 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01743 Pumo-Chr1 29384372 29386513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01743 1 258 MYB Transcription Factor Family AT3G01140 61.977 3.26e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo1g01743 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01743 K09422 - gmx:100809025 681.019