Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01739 ATGATTATTGGAGGCTATATCCTCAATTATGACAAAGGCTTCATCAAAGAGAACGAAAATTCTCTCAGCTTGTGGCTCAAGGAAGAGGGTGTTATCTCTGGCAAGACCCCAGTGAAGCCTGGTGTGGTGCCAGAAGGCCTAGGACTGGTTGCACTCAAAGACATTTCTAGGAATGAGGTTGTCCTGCAGGTTCCCAAGAGGCTGTGGATTAACCCTGATGCTGTGGCAGCTTCTGAGATTGGGAAGGTGTGCAGTGGATTGAAGCCTTGGCTGGCTGTTGCACTGTTTCTGATAAGAGAGAGGTCAAGGAGTGATTCTCTTTGGAAGCACTACTTCAGCATTCTGCCTAAGGAAACTGACTCTACTATATATTGGTGGGTTTCTTTTGGGACTCAACTTCTGAACACAACACGGAGTGTGAAAGAGTATGTGCAGAATGAATTTAGGAGACTGGAAGAAGAAATTATACTCCCTAACAAGAAGCTTTTCCCTTCTCCTATTACACTTAATGACTTCTTCTGGGCATTTGGAATTCTAAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTGTGATTCCATTAGCTGACTTGATAAACCATAGTTCCAGAGTAACTACAGAAGATCATGCTTATGAAATTAAAGGAGCAGCAGGTCTTTTCTCCTGGGATTATCTATTTTCCCTAAGGAGCCCCCTTTCTCTCAAGGCTGGGGACCAGGTATATATCCAATATGATTTGAATAAAAGCAATGCCGAGTTGGCTCTGGACTACGGTTTCATTGAACCGAATGCAGATCGGAATGCATATACCTTGACACTGCAGATATCTGAGTCAGACCCCTTTTTTGGTGACAAACTAGACATTGCTGAGTCCAATGGTTTTGGTGAGACAGCATACTTTGACATCTGCTACAACCGGCCACTTCCAGCAGGGTTGCTTCCATATTTGAGACTAGTAGCTCTGGGGGGCACTGATGCTTTTCTGTTGGAGTCAATATTTAGAAACTCCATCTGGGGTCATCTTGAATTGCCTGTGAGCCGTGACAATGAGGAACTAATATGCAGAGTGGTTAGAGAGACCTGCAAAACTGCCCTTACTGGTTATCATACAACCATTGAAGAGGATCAAAAGTTGAAAGAAGCAAAGCTAGATTCAAGGCATGCTATAGCAGTTGGAATCAGGGAAGGGGAGAAGAAGCTCCTGCAGCAAATTGATGAGATCTTCAAGGAGAAAGAATTGGAATTGGCCCAGTTAGAATATTATCAAGAAAGGAGGCTCAAGGACCTTGGACTTTGCGGGGAAAATGGTGATATCCTTGGAGACCTTGGAAAATACTTCTAG 1350 0.4378 MIIGGYILNYDKGFIKENENSLSLWLKEEGVISGKTPVKPGVVPEGLGLVALKDISRNEVVLQVPKRLWINPDAVAASEIGKVCSGLKPWLAVALFLIRERSRSDSLWKHYFSILPKETDSTIYWWVSFGTQLLNTTRSVKEYVQNEFRRLEEEIILPNKKLFPSPITLNDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSSRVTTEDHAYEIKGAAGLFSWDYLFSLRSPLSLKAGDQVYIQYDLNKSNAELALDYGFIEPNADRNAYTLTLQISESDPFFGDKLDIAESNGFGETAYFDICYNRPLPAGLLPYLRLVALGGTDAFLLESIFRNSIWGHLELPVSRDNEELICRVVRETCKTALTGYHTTIEEDQKLKEAKLDSRHAIAVGIREGEKKLLQQIDEIFKEKELELAQLEYYQERRLKDLGLCGENGDILGDLGKYF 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01739 449 Gene3D set domain protein methyltransferase, domain 1 16 263 - -
Pumo1g01739 449 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 25 447 IPR011192 GO:0009507|GO:0030785
Pumo1g01739 449 Pfam Rubisco LSMT substrate-binding 280 404 IPR015353 -
Pumo1g01739 449 SUPERFAMILY SET domain 18 268 IPR046341 -
Pumo1g01739 449 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 271 442 IPR036464 -
Pumo1g01739 449 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 15 262 - -
Pumo1g01739 449 PIRSF RMT_SET 11 448 IPR011192 GO:0009507|GO:0030785
Pumo1g01739 449 Pfam SET domain 46 247 IPR001214 GO:0005515
Pumo1g01739 449 Gene3D - 264 428 IPR036464 -
Pumo1g01739 449 ProSiteProfiles SET domain profile. 29 248 IPR001214 GO:0005515
Pumo1g01739 449 CDD SET_RBCMT 30 263 IPR044431 GO:0016279|GO:0018022
Pumo1g01739 449 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 19 395 - -
Pumo1g01739 449 SMART set_7 34 254 IPR001214 GO:0005515
Pumo1g01739 449 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 264 428 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo1g01739 SET 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01739 K00592 - gmx:100818113 805.438