Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01733 ATGGCGAACAAGAGAAAAAGATGGGAAGGTGATCTAGGAGGGGAAAGGAACAATGAAGAAGGGAACATTGAATGGGAGCAACTAAGAGAAGAAGCAGCATCAATGGCTGCTGCCATACTTGGAGCTAGAAGAGCTAAGAAACGTTACATCGGGGTGCGCCAAAGGCCTTCAGGGAGATGGGTGGCAGAAATCAAAGACACCATACAGAACATTAGGCTTTGGTTAGGCACTTATGACACTGCTGAAGATGCTGCTAGGGCTTATGATGAAGCAGCACGTTTGCTTCGTGGTGCCAACACTCGCACAAACTTTTTTCCTTCACAATCTTCTCCTTCTGTTCCTGCTCTTCCTCCAAAGATTGCCAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAACATTGCCTCTTCGTGTATTGTTAACACTACTCCTTTTCCTAGTAACCACTATGAACAAGAAACCAAACCCGAACCAGAACCCGATTTTTATAACCAAATAGAAGAACCCCATTATGGGAATTTTTTAGATATGGTAGGAAATGGGATTGTTGAAGAGAGTTCTTATGGTGCTAGTTATAGTTCTTCTTCTGCCATAACTACTTGTGACTATAGTTGCGGTACTAATGAAGAAAATTCTAACCTAGAGGGTAGTAGGGGGGATTCAAGATTCGAGTATCTTTGTGGTGACAGTGTTTATGATCAAAACAACAAAATTGTGAGTGGTAAAGGAGAGTTTGAAGATTGTGATGTTGGGATCAGTGATTTTCAGTTTTTGGACAGTGCTGGATCATTGAGTTACTCCTTTTCTCCTTTTGAGATAGCGGAGGAGATGGTGGGGCCGATAGAGGAAGAGAAATGTGATGTTGATGATTCACTATTTGGTAGAGAAACTTTCAGGATGAAATATGAACGTAAAGTCTCAGCTTGTCTTTACACCCTAATTGGGGTGTCTGAGTGTTTGAGGCTACAAGTTGGACCAGAAAATGGAAAGGAATTGGAAAATTTTTGA 1005 0.4179 MANKRKRWEGDLGGERNNEEGNIEWEQLREEAASMAAAILGARRAKKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFPSQSSPSVPALPPKIAKLLLLRLKARNIASSCIVNTTPFPSNHYEQETKPEPEPDFYNQIEEPHYGNFLDMVGNGIVEESSYGASYSSSSAITTCDYSCGTNEENSNLEGSRGDSRFEYLCGDSVYDQNNKIVSGKGEFEDCDVGISDFQFLDSAGSLSYSFSPFEIAEEMVGPIEEEKCDVDDSLFGRETFRMKYERKVSACLYTLIGVSECLRLQVGPENGKELENF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01733 334 MobiDBLite consensus disorder prediction 1 21 - -
Pumo1g01733 334 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Pumo1g01733 334 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Pumo1g01733 334 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Pumo1g01733 334 CDD AP2 47 104 IPR001471 GO:0003700|GO:0006355
Pumo1g01733 334 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Pumo1g01733 334 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Pumo1g01733 334 FunFam ethylene-responsive transcription factor RAP2-11 47 106 - -
Pumo1g01733 334 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 195 - -
Pumo1g01733 334 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Pumo1g01733 334 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01733 Pumo-Chr1 29258639 29259643 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01733 46 124 AP2-EREBP Transcription Factor Family AT5G19790 65.854 4.28e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo1g01733 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01733 K09286 - gmx:100793940 462.611