Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01731 ATGAATGAGAATATGGCGAACAAGAGAAAAAGATGGGAAGGTGATCAAGGAGGGGAAAAGAACAATGAAGAAGGGAACATTGAATGGGAGCAACTAAGAGAAGAAGCAGCATCAATGGCTGCTGCCATACTTGGAGCTAGAAGAGCTAAGAAACGTTACATAGGGGTGCGCCAAAGACCTTCAGGGAGATGGGTGGCTGAAATCAAAGACACCATACAGAACATTAGGCTTTGGTTAGGCACTTATGACACTGCTGAAGATGCTGCTAGGGCTTATGATGAAGCAGCACGTTTGCTTCGCGGTGCCAACACTCGCACAAACTTTTTTCCCTTCACAATCTTCTCCTTCTGTTCCTGCTCTTCCTCCAAAGATTGCCAAACTCCTCCTTCTTAG 393 0.458 MNENMANKRKRWEGDQGGEKNNEEGNIEWEQLREEAASMAAAILGARRAKKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFPFTIFSFCSCSSSKDCQTPPS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01731 130 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Pumo1g01731 130 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 125 - -
Pumo1g01731 130 FunFam ethylene-responsive transcription factor RAP2-11 51 110 - -
Pumo1g01731 130 CDD AP2 51 108 IPR001471 GO:0003700|GO:0006355
Pumo1g01731 130 Gene3D AP2/ERF domain 51 110 IPR036955 GO:0003700|GO:0006355
Pumo1g01731 130 MobiDBLite consensus disorder prediction 1 27 - -
Pumo1g01731 130 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Pumo1g01731 130 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Pumo1g01731 130 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Pumo1g01731 130 Pfam AP2 domain 52 101 IPR001471 GO:0003700|GO:0006355
Pumo1g01731 130 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01731 Pumo-Chr1 29223461 29223853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01731 50 110 AP2-EREBP Transcription Factor Family AT5G19790 75.000 3.26e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo1g01731 AP2 7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01731 K09286 - gmx:100793940 153.68