Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01708 ATGGTTGGCGGTGGAAATGGAGAGGGAGGAGAGCAAGCACCACCGCCCTCGACGGCGGCGCGTCCCAGAAGCAGCCTCCGGCCACGCGCCTCCGTGGAGAGCGTTTACAGCGGCGGGTCCGCCGTGGGGTACAGCCCCAGTCCCATGACTATGCTTTCGAGCTTCTTCGGCGACGGCGACGAGTGTAAGTCGTTCTCGGAGCTTCTCGCCGGCGCCATGGTGGACCCCACCGCACCCTCGCCCATGCCCACGTTCACCCTTCCACCTAGCTTTCTCGATTCACCTTCTCAAGGGCACTTTGGAATTACAAACCAGCAGATGCTAGCACAGATCACATCTCAACCTGTGCCAGCCCACTTCAATGTGCAAATCCAATCTGAACATCCATTCACTGTATCAGCAGTTCCTTCTACCTCATTGACACAGGTTCCTACAGGATCCAGTGCTGCACAACAACTAATACCACCCTCAATGCCAGACTCTAGGGTGACAGAATCCCTTGATTATTCTCACTCTGAACAAAAATTGCAGTCTTCTTCTTCTGTGAATGTTGATAATAAGCCTAATAATGATGGCTACAACTGGAGGAAGTATGGGCAGAAACAAGTGAAGGGTAGTGACTTCTCTAGAAGCTATTACAAATGCACACATCCAAATTGTCCTGTGAAGAAAAAGCTTGAGCGTTCTCTTGAGGGTCATGTAACTGCAATTATCTATAAAGGGGAGCACAATCACCAACGTCCTCATCCCAGCAAGATCACAAGAGACACCCCAACTTCGTAA 783 0.5134 MVGGGNGEGGEQAPPPSTAARPRSSLRPRASVESVYSGGSAVGYSPSPMTMLSSFFGDGDECKSFSELLAGAMVDPTAPSPMPTFTLPPSFLDSPSQGHFGITNQQMLAQITSQPVPAHFNVQIQSEHPFTVSAVPSTSLTQVPTGSSAAQQLIPPSMPDSRVTESLDYSHSEQKLQSSSSVNVDNKPNNDGYNWRKYGQKQVKGSDFSRSYYKCTHPNCPVKKKLERSLEGHVTAIIYKGEHNHQRPHPSKITRDTPTS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01708 260 SMART WRKY_cls 189 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo1g01708 260 MobiDBLite consensus disorder prediction 137 196 - -
Pumo1g01708 260 MobiDBLite consensus disorder prediction 137 197 - -
Pumo1g01708 260 Pfam WRKY DNA -binding domain 190 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo1g01708 260 ProSiteProfiles WRKY domain profile. 184 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo1g01708 260 MobiDBLite consensus disorder prediction 240 260 - -
Pumo1g01708 260 MobiDBLite consensus disorder prediction 1 32 - -
Pumo1g01708 260 SUPERFAMILY WRKY DNA-binding domain 185 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo1g01708 260 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 123 252 IPR044810 GO:0003700
Pumo1g01708 260 FunFam WRKY transcription factor 176 249 - -
Pumo1g01708 260 Gene3D WRKY domain 174 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01708 Pumo-Chr1 28705995 28707834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01708 19 248 WRKY Transcription Factor Family AT2G03340 41.368 1.25e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo1g01708 WRKY 3.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01708 - - gmx:100784936 355.525