Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo1g01708 | ATGGTTGGCGGTGGAAATGGAGAGGGAGGAGAGCAAGCACCACCGCCCTCGACGGCGGCGCGTCCCAGAAGCAGCCTCCGGCCACGCGCCTCCGTGGAGAGCGTTTACAGCGGCGGGTCCGCCGTGGGGTACAGCCCCAGTCCCATGACTATGCTTTCGAGCTTCTTCGGCGACGGCGACGAGTGTAAGTCGTTCTCGGAGCTTCTCGCCGGCGCCATGGTGGACCCCACCGCACCCTCGCCCATGCCCACGTTCACCCTTCCACCTAGCTTTCTCGATTCACCTTCTCAAGGGCACTTTGGAATTACAAACCAGCAGATGCTAGCACAGATCACATCTCAACCTGTGCCAGCCCACTTCAATGTGCAAATCCAATCTGAACATCCATTCACTGTATCAGCAGTTCCTTCTACCTCATTGACACAGGTTCCTACAGGATCCAGTGCTGCACAACAACTAATACCACCCTCAATGCCAGACTCTAGGGTGACAGAATCCCTTGATTATTCTCACTCTGAACAAAAATTGCAGTCTTCTTCTTCTGTGAATGTTGATAATAAGCCTAATAATGATGGCTACAACTGGAGGAAGTATGGGCAGAAACAAGTGAAGGGTAGTGACTTCTCTAGAAGCTATTACAAATGCACACATCCAAATTGTCCTGTGAAGAAAAAGCTTGAGCGTTCTCTTGAGGGTCATGTAACTGCAATTATCTATAAAGGGGAGCACAATCACCAACGTCCTCATCCCAGCAAGATCACAAGAGACACCCCAACTTCGTAA | 783 | 0.5134 | MVGGGNGEGGEQAPPPSTAARPRSSLRPRASVESVYSGGSAVGYSPSPMTMLSSFFGDGDECKSFSELLAGAMVDPTAPSPMPTFTLPPSFLDSPSQGHFGITNQQMLAQITSQPVPAHFNVQIQSEHPFTVSAVPSTSLTQVPTGSSAAQQLIPPSMPDSRVTESLDYSHSEQKLQSSSSVNVDNKPNNDGYNWRKYGQKQVKGSDFSRSYYKCTHPNCPVKKKLERSLEGHVTAIIYKGEHNHQRPHPSKITRDTPTS | 260 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo1g01708 | 260 | SMART | WRKY_cls | 189 | 247 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo1g01708 | 260 | MobiDBLite | consensus disorder prediction | 137 | 196 | - | - | |
Pumo1g01708 | 260 | MobiDBLite | consensus disorder prediction | 137 | 197 | - | - | |
Pumo1g01708 | 260 | Pfam | WRKY DNA -binding domain | 190 | 246 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo1g01708 | 260 | ProSiteProfiles | WRKY domain profile. | 184 | 248 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo1g01708 | 260 | MobiDBLite | consensus disorder prediction | 240 | 260 | - | - | |
Pumo1g01708 | 260 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Pumo1g01708 | 260 | SUPERFAMILY | WRKY DNA-binding domain | 185 | 248 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo1g01708 | 260 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 123 | 252 | IPR044810 | GO:0003700 | |
Pumo1g01708 | 260 | FunFam | WRKY transcription factor | 176 | 249 | - | - | |
Pumo1g01708 | 260 | Gene3D | WRKY domain | 174 | 249 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo1g01708 | Pumo-Chr1 | 28705995 | 28707834 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo1g01708 | 19 | 248 | WRKY Transcription Factor Family | AT2G03340 | 41.368 | 1.25e-53 | 179 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Pumo1g01708 | WRKY | 3.4e-24 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo1g01708 | - | - | gmx:100784936 | 355.525 |