Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01703 ATGCATAGGAGTGATTTGATCAATTTTGACTATGCAGGAGAGAGATTAGTGAATAACTGGTCTAGAGTTGTGCTGATTGTATGGATATTTGTAGTGCTCATCATCACCCAAAGGTACACTGCGAGTTTAACTTCGATGCTAACAATAGAAAGCCTGCGACCAGAATTCATTGACATAAAAGAGATAAAAAGGAACAATTACTTTGTGGGATATCAGAACCAATCCTTCGTGAAAACGATTTTAATAAATCAATTGGGATTCAGTGAGTCCCAGTTGAAGGCCTACAATACTCCTGAAGAGTATCATGAAGCACTTTCAAAAGGGACCAACAACGGCGGGGTAGCAGCTATCTTTGATGAAAGTCCCTACATCAACGTTTTTCTCTCGAAATATGACACTGGATATGCTACAGTGGGACCGTTTTATAAAACAAACGGATTAGCCTTTGTGAGTTCTTTCTCTCACTCTCAATTGCTAGCAACTAGTGCTAATAGAGGTGTCAAATGGGCCGGGCCGGGTCGACCTAGCCCATCGGGCCAAATGATGAAAACGGGCTAG 558 0.4176 MHRSDLINFDYAGERLVNNWSRVVLIVWIFVVLIITQRYTASLTSMLTIESLRPEFIDIKEIKRNNYFVGYQNQSFVKTILINQLGFSESQLKAYNTPEEYHEALSKGTNNGGVAAIFDESPYINVFLSKYDTGYATVGPFYKTNGLAFVSSFSHSQLLATSANRGVKWAGPGRPSPSGQMMKTG 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01703 185 Pfam Ligand-gated ion channel 14 66 IPR001320 GO:0015276|GO:0016020
Pumo1g01703 185 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 18 152 IPR015683 -
Pumo1g01703 185 SUPERFAMILY Periplasmic binding protein-like II 35 157 - -
Pumo1g01703 185 Gene3D - 10 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01703 Pumo-Chr1 28579018 28580622 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01703 20 149 Ion Channels AT5G11180 43.846 1.72e-34 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01703 K05387 - gmx:100799966 261.922