Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01700 ATGCATAGGAGTGATTTGATCAATTTTGACTATGCAGGAGAGAGATTAGTGAATAACTGGTCTAGAGTTGTGCTGATTGTATGGATATTTGTAGTGCTCATCATCACCCAAAGTTACACTGCGAGTTTAACTTCGATGCTAACAATAGAAAGCCTGCGACCAGAATTCATTGACATAAAAGAGATAAAAAGGAACAATTACTTTGTCGGATATCAGAACCAATCCTTCGTGAAAACGATTTTAATAAATCAATTGGGATTCAGTGAGTCCCGGTTGAAGGCCTACAATACTCCTGAAGAGTATCATGAAGCACTTTCAAAAGGGACCAACAACGGCGGGGTAGCAGCTATCTTTGATGAAAGTCCCTACATCAACGTTTTTCTCTCGAAATATGACACTGGATATGCTACAGTGGGACCGTTTTATAAAACAAACGGATTAGCCTTTGTGAGTTCTTTCTCTCACTCTCAATTGTAA 477 0.3899 MHRSDLINFDYAGERLVNNWSRVVLIVWIFVVLIITQSYTASLTSMLTIESLRPEFIDIKEIKRNNYFVGYQNQSFVKTILINQLGFSESRLKAYNTPEEYHEALSKGTNNGGVAAIFDESPYINVFLSKYDTGYATVGPFYKTNGLAFVSSFSHSQL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01700 158 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 18 150 IPR015683 -
Pumo1g01700 158 Gene3D - 10 91 - -
Pumo1g01700 158 Pfam Ligand-gated ion channel 14 66 IPR001320 GO:0015276|GO:0016020
Pumo1g01700 158 SUPERFAMILY Periplasmic binding protein-like II 35 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01700 Pumo-Chr1 28546226 28547162 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01700 20 149 Ion Channels AT5G11180 45.385 3.55e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01700 K05387 - gmx:100799966 262.307