Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01698 ATGGTTGTTTCAACGAAGCATGATGAGAGACGAAACATGTGGGTGTTCTTGAAGCCTCTGAGTTGGGGTCTTTGGTTGACTACTGGTGCAACCTTGGTCCTCACCGGATTCGTGGTGTGGTTTTTTGAGCACCGCTCAAACGCAGCCTTTAGAGGAACCCCTGACCAGCAACTTGGCATTGTTTTCTGGTTTTCCTTCTCCACACTCGTCTTTGCTCACAGAGAGAGATTAGTGAATAACTGGTCTAGAGTTGTGCTGATTGTATGGATATTTGTAGTGCTCATCATCACCCAAAGTTACACTGCGAGTTTAACTTCGATGCTAACAATAGAAAGCCTGCGACCAGAATTCATTGACATAAAAGAGATAAAAAGGAACAATTACTTTGTCGGATATCAGAACCAATCCTTCGTGAAAACGATTTTAATAAATCAATTGGGATTCAGTGAGTCCCAGTTGAAGGCCTACAATACTCCTGAAGAGTATCATGAAGCACTTTCAAAAGGGACCAACAACGGCGGGGTAGCAGCTATCTTTGATGAAAGTCCCTACATCAACGTTTTTCTCTCGAAATATGACACTGGATATGCTACAGTGGGACCGTTTTATAAAACAAACGGATTAGCCTTTGCATTTTCTCCACAATCACCTCTAGTGCCATATTTTTCGAGGGCAATCCTAAATGTCATTGAAGACAAAGACAAGTTTGAAGGGATTAAAAACAAGTCAAAGACCTACGACTAG 744 0.4207 MVVSTKHDERRNMWVFLKPLSWGLWLTTGATLVLTGFVVWFFEHRSNAAFRGTPDQQLGIVFWFSFSTLVFAHRERLVNNWSRVVLIVWIFVVLIITQSYTASLTSMLTIESLRPEFIDIKEIKRNNYFVGYQNQSFVKTILINQLGFSESQLKAYNTPEEYHEALSKGTNNGGVAAIFDESPYINVFLSKYDTGYATVGPFYKTNGLAFAFSPQSPLVPYFSRAILNVIEDKDKFEGIKNKSKTYD 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01698 247 Pfam Ligand-gated ion channel 21 127 IPR001320 GO:0015276|GO:0016020
Pumo1g01698 247 SUPERFAMILY Periplasmic binding protein-like II 2 233 - -
Pumo1g01698 247 FunFam Glutamate receptor 13 143 - -
Pumo1g01698 247 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 242 IPR015683 -
Pumo1g01698 247 SMART GluR_14 31 244 IPR001320 GO:0015276|GO:0016020
Pumo1g01698 247 Gene3D - 9 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01698 Pumo-Chr1 28523030 28527461 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01698 1 242 Ion Channels AT2G29110 50.413 1.91e-67 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01698 K05387 - gmx:100799966 461.455