Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01688 ATGGAGCAGGAGAGGAAGTATGTGTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGGAAGTCTCTGGGGGGTCACATCAGGACCCATATGATGACTGAGGAAAGAAGCAATGTTGTTGATGGTGACATGTTCATCAAGTTGGATGGTGGTGTGAGGAAGAAGAGGGATTTATGGTGTGAAGATGATGTTCTTGTTGGGAACAACCCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCTGGTGGTGGTGCCAACAATGTTCAACAGGAGGAGAGGTTCTGCAAAGAATGTGGGAAAGGTTTCCCATCACTGAAGGCTCTCTGTGGCCACATGGCTTGTCACTCAGAGAAAGAGAAGAGAACAGCCATCAAGTTTGAAGAGAGTGGTGACAAGAAGCTGAAATTGGTTATGGATAGTCAATCTGATACTGAGACTAATTGTGCTCCAACAACTCATCCAAGGAGATCCAAGAGAATGAGGGTGAAGACCATCAACCTTTCCAATCACCCTTTTTTTTCTTCTTCTTCTTCTCCTTCTTCCTCTTCTCTTGTTCCTTTGGCCAATGGTTCTTCACCTGTTTCAGAGGTGGAGCAGGAGCAAGAAGAGGTGGCTAGGTGCTTGATGCTGTTGTCTAGAGATTCTGGCTTCAAGGGCCGTTTTGCTTCGGTTACTGAATCTTCTGATAACAACTCGGTTATTCTAGAAGCAAAATCATCCTCTCCTGATACCCGGATTGGTGTCAGCAATGGTAATAATAACAACAACAACCTTGTCTCTAATCATGCTTATGATCTTGTGGACAAGAAGTTGCTTATGGTTAAGGATATCAAGTTCAAGTCTGCTGAGTTTGGTGCTTCTCATAATTCAGGTTCTAGATGTTTCAGATATGGTCCCAATCCCAAAACCAAAATGGTAGACTCAGATGTTTCAAATGATGAATTTAAGTGGCCCAAGGGGGGGTATAAGTCAAGCAAATACACTGCATCTGTGGCAAAGAAATTAGTGATGGAGGATTTGGATTATGATAGAACAGATGGAACTACAAGGAAGTTTGAGTCAAGAAAGAGAAGCAACTATGATTATTCTCTTGGTGGTCACAATCTAGTTGGTGTTTCTAGCAAGAAGATAGCAAACGGTTTTGGCAATGGAGTTTATGAGAATGGGACAAAAGGTTGGAAGCATGAGTGCTTTGAGGGTGAAAGGGACAATAATGGTTCATATGATTCAATAGATGTGAGTGATGAAAACAGTTCAGAGACTGAATCTTTTCCTGCTCCCAGGTCTCATCACAGTAGCAAGGCTCTCAATGGAAAAAAGTCCACCAGCAAGGCCAAGAAGAAGAAGTTGTTGAAGTCTAATAAGAAAAGCAAGGAACATGAGTGTCCAATCTGCTACAAAATTTTCAAGTCAGGCCAAGCCTTGGGAGGCCACAAAAGATCACATTTCATTGGAGGCTCTGAAGAAAACACTGTGGTGATCAAACAAGTTGCTCCTGTTGTTCCTTGCCTAATTGATCTCAATCTACCTGCTCCTGTTGATGAATAG 1563 0.4274 MEQERKYVCKYCSKRFPCGKSLGGHIRTHMMTEERSNVVDGDMFIKLDGGVRKKRDLWCEDDVLVGNNPIYGLRENPKKTMRFVHSGGGANNVQQEERFCKECGKGFPSLKALCGHMACHSEKEKRTAIKFEESGDKKLKLVMDSQSDTETNCAPTTHPRRSKRMRVKTINLSNHPFFSSSSSPSSSSLVPLANGSSPVSEVEQEQEEVARCLMLLSRDSGFKGRFASVTESSDNNSVILEAKSSSPDTRIGVSNGNNNNNNLVSNHAYDLVDKKLLMVKDIKFKSAEFGASHNSGSRCFRYGPNPKTKMVDSDVSNDEFKWPKGGYKSSKYTASVAKKLVMEDLDYDRTDGTTRKFESRKRSNYDYSLGGHNLVGVSSKKIANGFGNGVYENGTKGWKHECFEGERDNNGSYDSIDVSDENSSETESFPAPRSHHSSKALNGKKSTSKAKKKKLLKSNKKSKEHECPICYKIFKSGQALGGHKRSHFIGGSEENTVVIKQVAPVVPCLIDLNLPAPVDE 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01688 520 Gene3D Classic Zinc Finger 1 125 - -
Pumo1g01688 520 SMART c2h2final6 465 487 IPR013087 -
Pumo1g01688 520 SMART c2h2final6 7 29 IPR013087 -
Pumo1g01688 520 SMART c2h2final6 98 120 IPR013087 -
Pumo1g01688 520 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Pumo1g01688 520 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 520 - -
Pumo1g01688 520 ProSitePatterns Zinc finger C2H2 type domain signature. 467 487 IPR013087 -
Pumo1g01688 520 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Pumo1g01688 520 MobiDBLite consensus disorder prediction 175 195 - -
Pumo1g01688 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 465 487 IPR013087 -
Pumo1g01688 520 Pfam C2H2-type zinc finger 7 30 - -
Pumo1g01688 520 Pfam C2H2-type zinc finger 465 487 - -
Pumo1g01688 520 Pfam C2H2-type zinc finger 100 122 - -
Pumo1g01688 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Pumo1g01688 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Pumo1g01688 520 SUPERFAMILY beta-beta-alpha zinc fingers 5 120 IPR036236 -
Pumo1g01688 520 MobiDBLite consensus disorder prediction 409 460 - -
Pumo1g01688 520 MobiDBLite consensus disorder prediction 415 435 - -
Pumo1g01688 520 MobiDBLite consensus disorder prediction 438 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01688 Pumo-Chr1 28439958 28441629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01688 1 520 C2H2 Transcription Factor Family AT1G26610 42.430 2.44e-86 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo1g01688 zf-C2H2_6 1.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01688 - - gmx:102665457 722.62