Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01667 ATGGAAGAAGTTTGTCTGAATAGTGATCCACTTTTTGATGAAAGCGATGAGGTTGATGTTGAGGGGAACTCTTCTGTAGCAGAACATGATCTTGAATCTTTAAACTCACAACCGAATATCTCTCATCTTCCAACTGTGGGTCTGGAGTTTGATTCCTTTGATGAAGTTTACAACTTCTACAATATCTATGCAAAGGACCAAGGCTTTGGCATCAGAGTGAGCAATTCATGGTTTAGATCGAAGAAAAAAGAGCGCTATAGAGCAAAACTTAGCTGCAGTAGTGCTGGTTTTAAGAAAAAAAGTGAAGCCAATAATCCAAGACCAGAAACAAGAACTGGTTGTCCGGCAATGATAGTGATTAGAATGGTTGAGTCCAAGAGATGGAGAATAGTGGAAGTTGAGCTTCAACACAACCATCAAGTGAGTCCACAGAGCAAACGGTTTTACAAGTCACACAAGAAAATGATCCTTGAAGCCAGCAAATCACAACCACCGCCAGAGCCTGTAACAGAAGTACACACCATCAAGTTGTATCGAACAACTGTCATGGATGTTGATTGCAATGGTTACTCAAATTTTGAAGAAAGTCATGATACCAATTTTGATAAATTGAAATATTTGGAACTTAGAGAAGGGGATGCCAGTGCTATATATAATTATTTTTGCCGAATGAAGTTGACCAATCCAAATTTCTTTTACTTGTTTGATATTGATGATGATGGACACCTAAAAAATGTTTTCTGGGCTGATTCCAGGTCAAGGCTTGCTTATAATTACTTTAATGACACAGTTACAATAGACACAACTTGTTTGGCAAACAAATATGAGATCCCTTTGATATCATTTGTCGGTGTAAACCATCATGGACATTCTGTACTATTGGGTTGTGGCTTCCTTGGACATGAATCAGTGGATTATTTTGTCTGGATATTCAAGGCATGGCTTAAGTGTATGCTTGGTCGTCCTCCCCATGTTGTTATCACTGACCAGTGCAAGCCATTGCAAATTGCAGTTGCTGAGGTTTTTCCTCATGCTCGTCATTGTTATTCTTTGCAGTATATCATGCAAAGAGTTCCAGAAAAGTTGGGAGGGTTGCAAGGATATGAAGCAATCAGAAGACAGCTGTATAATGCTGTCTATGAGTCATTAAAGATAGTTGAGTTTGAATCTTCTTGGGCTGATATGATTAAATGTCACGGACTGGGAGATAACAAGTGGCTTCAGACATTGTATAAAGATAGGTATCTATGGGTTCCTGTTTACCTAAAAGATGCTTTTTTTATAGGACTGATCCCAACTAAAGAAAATGAGGGCCTAACTGCATTTTTTGATGGATATGTGCATAAACACACATCCTTTAAGGAATTTCTTGACAAGTATGACTTAGCTCTTCACAGGAAGCACTTGAAAGAAGCCATGGCGGATTTGGAGTCTAGAAAAGTAAGCTTTGAATTGAAAACGAGATGTAATTTTGAGGTCCAGCTCGCAAACGTGTACACAAAAGAAATCTTTCAAAAGTTTCAATCTGAGGTTGAGGGCATGTACTCTTGTTTCAACACAAGACAGGTAAGTGTCAATGGATCTATAATAACATACATTGTGAAAGAAAGAGTTGAAGTTGAGGGGAATGAGAAGGGGGTTAAAAGTTTTGAAGTTTTATACGAGACTACAGAATTGGACATTCGTTGCATTTGCAGTTTGTTCAATTACAAAGGATATCTGTGCAGGCATGCATTGAATGTTCTCAATTATAATGGCATTGAGGAAATCCCATCTCGGTACATCCTGCACCGTTGGAGGAGCAATTTCAAGCAAATTTTTAATCAATTCCATGTCTCTGATAATGTTGATACCTACAACCCTATGCACTTCTATACTCATCTGTTTAACAGTGCTCTTCCAGTGTTAGAAGTAGGGGCACAATCACAGGAGCATTATATGGTTGCTTTAAAAGAACTGGAGGAGTTGTTAGGCAAGTTTGATATAGAGGACAATAGCATAATGTAA 2007 0.3832 MEEVCLNSDPLFDESDEVDVEGNSSVAEHDLESLNSQPNISHLPTVGLEFDSFDEVYNFYNIYAKDQGFGIRVSNSWFRSKKKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIVIRMVESKRWRIVEVELQHNHQVSPQSKRFYKSHKKMILEASKSQPPPEPVTEVHTIKLYRTTVMDVDCNGYSNFEESHDTNFDKLKYLELREGDASAIYNYFCRMKLTNPNFFYLFDIDDDGHLKNVFWADSRSRLAYNYFNDTVTIDTTCLANKYEIPLISFVGVNHHGHSVLLGCGFLGHESVDYFVWIFKAWLKCMLGRPPHVVITDQCKPLQIAVAEVFPHARHCYSLQYIMQRVPEKLGGLQGYEAIRRQLYNAVYESLKIVEFESSWADMIKCHGLGDNKWLQTLYKDRYLWVPVYLKDAFFIGLIPTKENEGLTAFFDGYVHKHTSFKEFLDKYDLALHRKHLKEAMADLESRKVSFELKTRCNFEVQLANVYTKEIFQKFQSEVEGMYSCFNTRQVSVNGSIITYIVKERVEVEGNEKGVKSFEVLYETTELDIRCICSLFNYKGYLCRHALNVLNYNGIEEIPSRYILHRWRSNFKQIFNQFHVSDNVDTYNPMHFYTHLFNSALPVLEVGAQSQEHYMVALKELEELLGKFDIEDNSIM 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01667 668 ProSiteProfiles Zinc finger SWIM-type profile. 550 586 IPR007527 GO:0008270
Pumo1g01667 668 Pfam MULE transposase domain 264 356 IPR018289 -
Pumo1g01667 668 Coils Coil 466 486 - -
Pumo1g01667 668 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 41 659 IPR031052 GO:0006355
Pumo1g01667 668 Pfam SWIM zinc finger 558 583 IPR007527 GO:0008270
Pumo1g01667 668 SMART 26again6 561 588 IPR006564 GO:0008270
Pumo1g01667 668 Pfam FAR1 DNA-binding domain 58 142 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01667 Pumo-Chr1 28210253 28215883 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pumo1g01667 MULE 3e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01667 K17604 - gmx:100811666 1310.43