Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01663 ATGTTGGGTGGTCTATACGGAGACCTTCCTCCACCTTCCTCGGCGGAGGAAGACAACAAGCCCACTCCCAACGTGTGGTCCTCCAGCACCAAGATGGCCCCCGCCACGCTCCGCAAGCCCGCCTCCCTCTTCGCGCCCCCCCAAACCCTCCTCCGGGCCCAGCCCAAGCCCAAGCCCACCGCCACCCCCACCCCCACCCCCACCCTCAAGCCCGTCCTCTCCTCCACCCCCGCCCCTCCCCCCGACGACGCCCTCCAGCCCGCCCTCGTCGGCGTCCAGTCCACCGTCCTCGAGGAGTACGACCCGGCCCGGCCCAACGACTACGAGGAGTACCGCCGCGAGCGCAAGCGCAAAGCCCGCGAGGCCGAGATGCTGCGCGAGCTCGAGCGCCGCCGCCAGGAGGAGGAGGAGGAAGAGAGGGAAAGGGAAAAGGAAAGAGAGAGAGAAATAGAAAGAGATTACAACGACTCGAGGCTCAATGTTTCGGGTGAAGAGGCGTGGAGGAGGCGCGCCGCGATGAGCGGGGCCGTGCCGCCGAGGTCGCCGTCGCCGCCGCCGCCGGGGAATTCGGACGGGTTTAGCATAGGGAAGTCGGAGACGGGGGGGCTGGGCGTCGGGGCTGGCGGGCAGATGACGGCGGCGCAGCGGATGATGGCGAAGATGGGATGGAAGGAGGGGCAGGGGCTGGGGAAGCAGGAGCAGGGGATTACCACTCCTTTGATGGCGAAGAAGACGGATAGACGAGCTGGGGTTATTGTGAATGCCAGTGACAACAATAGCAGCAAGAAAGTAGTCAAGAGTGTTAACTTCAATGGAGTGCCCACCAAGGTGCTGCTGCTTAGGAACATGGTGGGTCCTGGTGAGGTAGACGACGAGCTGGAAGATGAGGTAGGATCAGAATGTGCCAAATATGGAACTGTAACCCGAGTTCTGATATTTGAGATAACAGAACCAAATTTCCCCACCAATGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGATCCGAAGAAACAACAAAAGCACTTATTGACCTTGATGGTCGGTACTTTGGGGGTAGAGTGGTGCGTGCCTCATTTTATGATGAGGAGAAGTTTAGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCTGGCTTCACCTGA 1146 0.5977 MLGGLYGDLPPPSSAEEDNKPTPNVWSSSTKMAPATLRKPASLFAPPQTLLRAQPKPKPTATPTPTPTLKPVLSSTPAPPPDDALQPALVGVQSTVLEEYDPARPNDYEEYRRERKRKAREAEMLRELERRRQEEEEEEREREKEREREIERDYNDSRLNVSGEEAWRRRAAMSGAVPPRSPSPPPPGNSDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNNSSKKVVKSVNFNGVPTKVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPTNEAVRIFVQFERSEETTKALIDLDGRYFGGRVVRASFYDEEKFSKNELAPMPGEIPGFT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01663 381 MobiDBLite consensus disorder prediction 18 35 - -
Pumo1g01663 381 PANTHER SPLICING FACTOR 45 SPF45 1 372 IPR040052 GO:0045292
Pumo1g01663 381 SMART rrm2_1 277 358 IPR003954 GO:0003676
Pumo1g01663 381 MobiDBLite consensus disorder prediction 1 209 - -
Pumo1g01663 381 FunFam Putative splicing factor 45 275 361 - -
Pumo1g01663 381 MobiDBLite consensus disorder prediction 58 84 - -
Pumo1g01663 381 Gene3D - 271 370 IPR012677 -
Pumo1g01663 381 SMART G-patch_5 208 254 IPR000467 GO:0003676
Pumo1g01663 381 MobiDBLite consensus disorder prediction 102 165 - -
Pumo1g01663 381 ProSiteProfiles G-patch domain profile. 210 256 IPR000467 GO:0003676
Pumo1g01663 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 362 IPR000504 GO:0003723
Pumo1g01663 381 Coils Coil 108 153 - -
Pumo1g01663 381 Pfam G-patch domain 213 252 IPR000467 GO:0003676
Pumo1g01663 381 SUPERFAMILY RNA-binding domain, RBD 279 365 IPR035979 GO:0003676
Pumo1g01663 381 CDD RRM_UHM_SPF45 274 370 IPR034653 -
Pumo1g01663 381 PIRSF SPF45 3 377 IPR040052 GO:0045292
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01663 216 251 C2H2 Transcription Factor Family AT5G26610 61.111 5.93e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01663 K12840 - gmx:100805487 525.013