Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01660 ATGGAGGTTAGTTCATTGATTATGGGTAACAAGACCTTGCTTCATTTTGAAGTAAGCTGTCACAAGCTTGGGAATAATGGGAAGGTTCAGTTAGCCTATAATTCTTCACAGAACAGTGGCAAGGCAGCTGAAATGTTGTTTTTATTGACCTTTGGTGAAGAATATCTGCATCATGCGAAACTTAATGCATATGAAGTTGCTCTTGGTGGAAGACTCAATAACATCAATATTGGGGACCTGAAGCTTTTTGAAAGTATGAAATTGTGTGATCCTGTGTCTATTCATTCTACAGAAGAGAGAGCCTCCGAAGACTACATTAGTTCAAATGTATCTTCCCTTGGCTGGATGGAGAAAACTGCAGATGATGTTATCAATAGGATGTTGATATTGTTATGTTCTGCATCTGGTTTGTGGTTTGGCTCACACAACTTACCACTCCCTGGACATGTTCTGATATATGGACCTCCTGGCTCTGGGAAAACTATATTAGCAAAAACTGTGGCAAAATCCCTTGAGAATCGTGAGGACATCTTAGCACACATAATTTTTGTTTCCTGCTCAAAACTTGCCCTGGAGAAGGTCCCAGCTATTCGCAAAGAACTTGCAAACCATGTAACTGAAGCTTTAAACCATGCTCCTTCTGTTGTCATCCTTGATGATCTTGATAGCATAATTTCTACCCCTGACTCTGAAGGATCTCAGCCGTCAATGTCTGTTGGTGGACTCCCAGATTTTCTGGTTGATATCGTGGATGAATATGGGGAGAAGAGGCAAAAATCATGTGGATTCGGACCAATAGCCTTCATTGCTTCCATACAATCCCTAGAGAAGATACCACAATCTTTGAGCTCTTCAGGACGGTTTGATTTTCACATAAAGCTGCCTGCTCCTGCAGCCTCTGAGCGCAGGGCTATGTTGAAGCATGAAATACAGAGGCGTCACTTGCGATGCGATGATGACGTCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTAGTTGACAGAACTGTCCATGCTGCTATTCGCCGTTTTCTGCCATCTAATGCTTCCATTTATGAGCATGAGAGTCCTGCTTTAATAAGGGAGGATTTCTCTCAGGCAATGCTTGATTTTCTTCCAGTTGCAATGCGTGATATCACAAAATCAGCTTCTGATGATGGCCGTTCTGGATGGGATGATGTGGGTGGTCTTGTTGACATTCGAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCACAAGCACCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCCGCTTCTTCACTTCGATTCATATCAGTGAAAGGGCCAGAGCTGTTAAACAAGTACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTCTCTAAAGCAGCTGCTGCAGCACCATGCCTACTTTTTTTTGATGAATTTGATTCTATTGCCCCCAAGAGAGGGCATGACAATACTGGAGTAACTGATCGTGTTGTTAATCAATTTCTGACTGAGTTAGATGGTGTTGAGATTTTAACTGGTGTATTTGTGTTTGCTGCAACCAGTAGACCAGATTTACTTGATGCAGCACTGTTGAGACCTGGTAGGTTAGATCGTCTTCTATTCTGTGACTTTCCATCTTGGCATGAGAGAATGGAAATTCTTGCAGTACTTTCTAGAAAGTTACCAATGGCCAATGATATTGATTTGGCTACAATAGCTGATATGACTGAGGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCACAGCTTGCAGCAGTTCATGATATTCTGGACAATGTGGATGCCTCTAGGCCAGAAAAAACACCAGTTATTACTGATGCTCTTCTGAAGTTCACAGCATCCAAGGCTAGATCATCTGTTTCAGAAGAAGAGAAGAGCAGACTCTACAATATATATGGCCAGTTCCTGGATTCAAAAAGATCTGTTGCTGCCCAGTCAAGGGATACAAAAGGCAAGAGGGCAACTCTAGCTTGA 2073 0.4226 MEVSSLIMGNKTLLHFEVSCHKLGNNGKVQLAYNSSQNSGKAAEMLFLLTFGEEYLHHAKLNAYEVALGGRLNNINIGDLKLFESMKLCDPVSIHSTEERASEDYISSNVSSLGWMEKTADDVINRMLILLCSASGLWFGSHNLPLPGHVLIYGPPGSGKTILAKTVAKSLENREDILAHIIFVSCSKLALEKVPAIRKELANHVTEALNHAPSVVILDDLDSIISTPDSEGSQPSMSVGGLPDFLVDIVDEYGEKRQKSCGFGPIAFIASIQSLEKIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRHLRCDDDVLLDVAVKCDGYDGYDLEILVDRTVHAAIRRFLPSNASIYEHESPALIREDFSQAMLDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERMEILAVLSRKLPMANDIDLATIADMTEGFSGADLQALLSDAQLAAVHDILDNVDASRPEKTPVITDALLKFTASKARSSVSEEEKSRLYNIYGQFLDSKRSVAAQSRDTKGKRATLA 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01660 690 Gene3D - 298 378 - -
Pumo1g01660 690 FunFam Peroxisome biogenesis protein 1 103 297 - -
Pumo1g01660 690 PANTHER AAA-FAMILY ATPASE 81 660 - -
Pumo1g01660 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 373 IPR027417 -
Pumo1g01660 690 FunFam Nuclear valosin-containing protein-like 395 574 - -
Pumo1g01660 690 FunFam Peroxisome biogenesis protein 1 298 378 - -
Pumo1g01660 690 Pfam AAA+ lid domain 589 628 IPR041569 -
Pumo1g01660 690 Pfam ATPase family associated with various cellular activities (AAA) 150 295 IPR003959 GO:0005524|GO:0016887
Pumo1g01660 690 Pfam ATPase family associated with various cellular activities (AAA) 437 564 IPR003959 GO:0005524|GO:0016887
Pumo1g01660 690 Gene3D - 97 297 IPR027417 -
Pumo1g01660 690 SMART AAA_5 433 569 IPR003593 GO:0016887
Pumo1g01660 690 SMART AAA_5 146 298 IPR003593 GO:0016887
Pumo1g01660 690 CDD RecA-like_PEX1_r2 408 565 - -
Pumo1g01660 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 659 IPR027417 -
Pumo1g01660 690 ProSitePatterns AAA-protein family signature. 537 555 IPR003960 GO:0005524|GO:0016887
Pumo1g01660 690 FunFam PeRoXisome assembly factor 568 646 - -
Pumo1g01660 690 Gene3D - 568 647 - -
Pumo1g01660 690 Gene3D - 398 659 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01660 Pumo-Chr1 28137835 28147755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01660 431 629 Calmodulin-binding Proteins AT3G56690 39.500 7.07e-38 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01660 K13338 - gmx:100803882 1269.6