Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01658 ATGAAAGATGGTGGTAGGAAGCAGGGTGTACCCTCACCCTGTGCTGCATGCAAGCTCCTTAGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCTTATTTTCCTGCTGATGAGCCTCAGAAGTTTGCAAATGTGCACAAAGTCTTTGGTGCCAGCAATGTCAACAAGATGCTTCAGGACTTACCAGAGCATCAGCGAGGAGATGCAGTGAGCAGCATGGTGTATGAGGCAAATGCAAGAGTGAGGGACCCTGTCTATGGCTGCGTGGGGGCCATCTCTTCTCTTCAGCAACAGATTGATGTGTTGCAGACCCAATTGGCAGTGGCACAGGCTGAGGCTGTGCACCTCAGGGTGCGCCAAACTGCACCACTCTACAGCCCCACCAGCCCAACCAACAGTGGCTCTCCATCACAAGCCAGGCCTATTTTTGACATGGACATGGTGGTGGACCAGACCACCTATGCTGATTCAATGTGGTGA 480 0.5208 MKDGGRKQGVPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQTAPLYSPTSPTNSGSPSQARPIFDMDMVVDQTTYADSMW 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01658 159 MobiDBLite consensus disorder prediction 123 142 - -
Pumo1g01658 159 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Pumo1g01658 159 Coils Coil 92 112 - -
Pumo1g01658 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 133 - -
Pumo1g01658 159 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Pumo1g01658 159 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01658 Pumo-Chr1 28117362 28121515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01658 1 159 AS2 family AT1G31320 68.824 8.90e-74 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo1g01658 LOB 5.3e-44 No_clan