Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01650 ATGGAAAGAGGCGCTTACAGAGGCAGAGGCCGTGGCCGTAACACTTACGGTGGCGGCCGTGACGGTAATGGTGGTGGTCGCGGTGGTTACGGTGGCCGTGACGGTAACGGTGGTGGTCGCGGTGGTTATGGTGGTGGTCGCGGTGGTGGCCGTGACGGTAGCGGTGGCGGCCGTGACGGTCGCGGTGGTCGTAACATTTACGGTGACAGAGGAGGAGGGTTTCATCAACAACATCCCCGATCTGACAGTGGAAATAATGAAAGAGTGTTTCCTTCTCAATCACCATCACAATGGCAACCAAGGCCAAACCCTTCTTCTTCTTCTTCTTCTTCTTCTGTTGTTGCATCTCCAAAACCTAACCCTTCTCAAACTCAAACACAAACTCCTCCAGACATTGCATCTCTGAAAATGTCAGAGCAGAAGACGGACCATATCACACCTGTGCGTAGGCCTGACAATGGTGGAAGAGTGGCGGTTCGAAAATGCGATCTCCGAGTGAACCATTTCCCTGTTTCGTTCAATCCAAAGAGCATAATCATGCACTACAATGTCGATGTGAAGGCCAAGGCTCCCCCTAAGAACAATCGCCCTCCGAAGAAGATTTCCAAGTTCGACTTGTCGTTGATTCGGGAAAAGCTGTTTTCCGATAACTCGCTGCCGGTGTCGGCGTATGATGGCGAAAAGAACATCTTCAGCGCGGTGCCGTTGCCGGAGGAAACCTTCTCCGTGGACGTGTCCAAGGGAGAGGATGAGAGGACTGTTACGTATTTGGTCACTCTGACATTGGTGAACAAGCTTGAGCTTCGCAAATTGAGGGATTACCTCAGTGGAAGCTTGCTTTCGATTCCTAGGGATATTTTGCAGGGCTTGGATTTGGTGGTGAAGGAGAATCCCTCGAAGCAGTGTGTTTCGTTGGGGCGGTGTTTCTTCCCCATGAACCCTCCTTTGAGGGAGAAGGATCTTAACCATGGGATAATTGCAATTGGAGGGTTTCAGCAGAGTCTCAAGTCCACTTCTCAGGGCTTGGTATTGTGCCTGGACTATTCTGTTTTGTCCTTTCGGAAGAAATTGTCGGTGTTGGACTTTCTGCACGAGCATATTAGGGACTTCAATTTGAGGGAGTTTGGGAGGTTCAGGAGACAAGTTGAGCACGTACTTGTTGGGTTGAAAGTTCATGTTACCCACCGGAGGACGAAGCAGAAGTACACTATTACAAAGTTGACGCCCAAGATCACGAGGCATATCACATTCCCTATTTTGGACCCTGAGGGCCGGAATCCCCCAAGGGAAGCTAGCCTGCTTGCTTACTTTCAGGAAAAGTATGATGTGAACATTCAATACAAGGACATTCCTGCCTTGGATTTTGGAGGCAACAAGACGAATTACGTGCCTATGGAGTTGTGTGTCTTGGTTGAGGGTCAAAGATACCCCAAAGAGAATTTGGATAGGTATGCTGCCAAGGACTTGAAAGACATGTCAGTGGCTCCTCCGAGGGTGAGGCAAGGTACCATACAAGCAATGGTGAGCTCAAAGGAAGGACCATGCGGAGGTGGTGTTATTAAAAATTTTGGAATGAGTGTCAACACTTCCATGACAAATGTGACAGGACGTGTAATTCAGCCCCCAAAATTGAAGTTAGGCAATCCAAATGGCCAGACTATTAGTATGACACTGGAAGTAGAGAAATGTCAGTGGAATCTAGTGGGAAAATCAATGGTGGAAGGCAAGCCAGTTGAGTGTTGGGGCGTTCTTGATTTTACCAGCCAGGAGTCTGGTTGGCGCAAATTAAAAGGCAAACAATTCATTGAGGGCCTTATTGATAAGTACAGAAGATTGGGCATTGGCATGAATGATCCAGTTTGGTATGAACAATCTGGTATGTGGGTTCTTGGGGATTACAATTCGCTGTGTAAATTACTCGAAAGTATTGATGATAAGGTTCAAAAAAGATGTCGGCGAAAACTACAATTTCTTCTTTGTGTGATGGCTGACAAGCATCAAGGTTACAAGTGCCTCAAATGGATTGCTGAGACAAAGGTTGGCATAGTGACACAATGCTGCTTGTCTGGTAATGCTAATGAAGGGAAGGACCAATATCTTACAAATCTTGCCCTCAAGATCAATGCCAAAATTGGAGGAAGTAATGTAGAGCTCATCAATAGGCTACCACACTTTGAGGGCGAAGGTCATGTTATGTTCATAGGGGCTGATGTCAATCATCCAGCTTCCCGGGACATCAACAGTCCATCAATTGCTGCTGTAGTTGCCACTGTTAATTGGCCTGCAGCAAATCGCTATGCAGCACGTGTTTGTGCTCAAGGTCATCGGGTTGAGAAAATTTTGAATTTTGGGAGAATTTGCTACGAACTTGTTTCACATTATGAAAGGCTGAACAAAGTCAGGCCTGAAAAAATTGTTATCTTTCGTGATGGCGTGAGTGAAAGTCAATTTCATATGGTTCTCACGGAGGAGTTACAAGATTTGAAATCGGTTTTTCGTGATTCAAATTACTTCCCAACTATCACTATTATTGTCGCACAAAAGCGACATCAAACTCGATTTTTTCCTGTGGGTCCAAGGGATGGGATTCAAAATGGCAATGTGTTTCCTGGTACAGTTGTGGACACAAAAGTAGTACATCCTTTTGAATTTGACTTTTACCTTTGTAGTCACTATGGAAGCTTGGGTACAAGCAAGCCCACTCACTATCATGTCTTATGGGATGAGCACAAATTTACCTCTGATGATCTGCAGAAACTCATATATGACATGTGCTTTACCTTTGCAAGGTGCACTAAACCTGTGTCTTTAGTCCCTCCAGTGTACTATGCTGATCTCACTGCATATAGAGGAAGGTTATACTATGAAGCAATGAATCAAATGCAATCTCCTGGTTCGGCTGCATCTTCTTCATCATCACTGATTGCTTCTTCGTCAGTTTCTTCAATAAGCTCAAGTTTAAATGATCCGGGGTATTACAAGTTGCATGCTGATGTGGAAAACATAATGTTCTTCATTTGA 3021 0.4558 MERGAYRGRGRGRNTYGGGRDGNGGGRGGYGGRDGNGGGRGGYGGGRGGGRDGSGGGRDGRGGRNIYGDRGGGFHQQHPRSDSGNNERVFPSQSPSQWQPRPNPSSSSSSSSVVASPKPNPSQTQTQTPPDIASLKMSEQKTDHITPVRRPDNGGRVAVRKCDLRVNHFPVSFNPKSIIMHYNVDVKAKAPPKNNRPPKKISKFDLSLIREKLFSDNSLPVSAYDGEKNIFSAVPLPEETFSVDVSKGEDERTVTYLVTLTLVNKLELRKLRDYLSGSLLSIPRDILQGLDLVVKENPSKQCVSLGRCFFPMNPPLREKDLNHGIIAIGGFQQSLKSTSQGLVLCLDYSVLSFRKKLSVLDFLHEHIRDFNLREFGRFRRQVEHVLVGLKVHVTHRRTKQKYTITKLTPKITRHITFPILDPEGRNPPREASLLAYFQEKYDVNIQYKDIPALDFGGNKTNYVPMELCVLVEGQRYPKENLDRYAAKDLKDMSVAPPRVRQGTIQAMVSSKEGPCGGGVIKNFGMSVNTSMTNVTGRVIQPPKLKLGNPNGQTISMTLEVEKCQWNLVGKSMVEGKPVECWGVLDFTSQESGWRKLKGKQFIEGLIDKYRRLGIGMNDPVWYEQSGMWVLGDYNSLCKLLESIDDKVQKRCRRKLQFLLCVMADKHQGYKCLKWIAETKVGIVTQCCLSGNANEGKDQYLTNLALKINAKIGGSNVELINRLPHFEGEGHVMFIGADVNHPASRDINSPSIAAVVATVNWPAANRYAARVCAQGHRVEKILNFGRICYELVSHYERLNKVRPEKIVIFRDGVSESQFHMVLTEELQDLKSVFRDSNYFPTITIIVAQKRHQTRFFPVGPRDGIQNGNVFPGTVVDTKVVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHKFTSDDLQKLIYDMCFTFARCTKPVSLVPPVYYADLTAYRGRLYYEAMNQMQSPGSAASSSSSLIASSSVSSISSSLNDPGYYKLHADVENIMFFI 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01650 1006 Pfam Argonaute linker 1 domain 305 355 IPR014811 -
Pumo1g01650 1006 ProSiteProfiles Piwi domain profile. 657 956 IPR003165 GO:0003676
Pumo1g01650 1006 SMART DUF1785_2 303 356 IPR014811 -
Pumo1g01650 1006 Pfam N-terminal domain of argonaute 160 293 IPR032474 -
Pumo1g01650 1006 Gene3D - 538 719 - -
Pumo1g01650 1006 SMART Piwi_a_2 657 956 IPR003165 GO:0003676
Pumo1g01650 1006 MobiDBLite consensus disorder prediction 78 131 - -
Pumo1g01650 1006 Gene3D - 727 1006 IPR036397 GO:0003676
Pumo1g01650 1006 Gene3D paz domain 352 476 - -
Pumo1g01650 1006 CDD Piwi_ago-like 519 955 IPR045246 -
Pumo1g01650 1006 Pfam PAZ domain 365 482 IPR003100 GO:0005515
Pumo1g01650 1006 CDD PAZ_argonaute_like 358 471 - -
Pumo1g01650 1006 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 158 957 - -
Pumo1g01650 1006 SUPERFAMILY PAZ domain 353 509 IPR036085 GO:0005515
Pumo1g01650 1006 SUPERFAMILY Ribonuclease H-like 641 957 IPR012337 -
Pumo1g01650 1006 Pfam Piwi domain 658 955 IPR003165 GO:0003676
Pumo1g01650 1006 ProSiteProfiles PAZ domain profile. 388 472 IPR003100 GO:0005515
Pumo1g01650 1006 SMART PAZ_2_a_3 361 504 IPR003100 GO:0005515
Pumo1g01650 1006 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01650 Pumo-Chr1 28037055 28041813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01650 160 971 Eukaryotic Initiation Factors Gene Family AT1G48410 35.287 9.25e-142 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01650 K11593 - gmx:100805250 1618.59