Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01642 ATGTCAGAGAAAATGGAATCGAATGCGAATAGCGAGCAAATTGTTGACGTTGGATCGGTGGTGGAAGCCGTTTCTGCTGACGACGGTGACGCTCCTCTCTACAGCCTCGAAAGTCTCTGCATGCGTTGCGGTGAAAACGGGATTACAAGATTTTTATTGACTTTAATTCCTAACTTCAGAAAGATTTTGTTGTCAGCTTTTGAATGTCCACACTGTGGTGAGAGGAACAATGAAGTACAGTTTGCTGGTGAAATTCAACCGCGTGGTTGTCGTTACTCTCTGGAGATCCCATCAGGCGAACAAAAGATGCTAAATCGACAAGTGGTAAAAGCAGAATCTGCTACCATTAAGATACCTGAACTGGATTTTGAGATTCCACCAGAGGCTCAGCGTGGTAGTCTGTCAACGGTGGAAGGGATACTAATGAGAGCAGCTGATGAACTTCAGGCTCTTCAAGAGGAACGCAAAAAAGTGGCTCCAGAGACAGCTGAGGCAATTGATCAGTTCTTGGTGAAACTGCGAGCCTGTGCAACAGGAGAATCAGCCTTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTTATTGAAAACCCGTTTGCACCATCATCTGATCCATCACTGACTATCAAGTTTTATGAGAGAACTCCTGAGCAGCAAGCATCATTGGGATACCTTGTTGATTCCACACAGATGGAAGGAACTCATGATGAAGTGCCAGAAGGGGGAGAAGCTGTGACTGCTGATCAAGTGAGGAGAGAACCTCATGGGTCAATAGGGGCAACAGCTGGTCATCGAGCCATTGCACAGATTAACAGTGCAGAGATTGCTGATGCCTTATTTCGATATACTGCGCCAGAAGAGGTGATGACTTTCCCATCTTCTTGTGGTGGCTGTGCTGCTAAGTGTGAGACTCGAATGTTTGTCACCAATATTCCTTACTTCCAAGAAGTAATTGTTATGGCATCCACATGTGATGCCTGTGGTTACCGCAACTCTGAGTTGAAACCTGGTGGACGAATTCCTGAAAAAGGAAAAAGAATTACTCTTTATGTGAAGAATGTTAATGACCTGAGCCGTGATGTAATAAAGTCTGATACTGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATTGTTACAACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAGCCTTGAGAGGGTCCATGGCTTTACTTTTGGAGATAGTCTTGATGAACAGAGAAGAAGCAAGTGGATAGACTTTAAAGCAAGGCTAAACAAGCTTCTTAGCTTGGAAGAAGCTTGGACTCTAATTCTCGATGATGCATTAGCCAATTCTTTTGTAGCACCTGCAACTGATGATTTGAAAGAGGACAATCAATTAGCATTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGATATGGACACATCTTCTGCCGATGTTGCTTATGAATCAACAAATACTACTAAAACTGAGTGA 1512 0.4319 MSEKMESNANSEQIVDVGSVVEAVSADDGDAPLYSLESLCMRCGENGITRFLLTLIPNFRKILLSAFECPHCGERNNEVQFAGEIQPRGCRYSLEIPSGEQKMLNRQVVKAESATIKIPELDFEIPPEAQRGSLSTVEGILMRAADELQALQEERKKVAPETAEAIDQFLVKLRACATGESAFTFILDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQASLGYLVDSTQMEGTHDEVPEGGEAVTADQVRREPHGSIGATAGHRAIAQINSAEIADALFRYTAPEEVMTFPSSCGGCAAKCETRMFVTNIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLYVKNVNDLSRDVIKSDTASVKVPELDLELASGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDEQRRSKWIDFKARLNKLLSLEEAWTLILDDALANSFVAPATDDLKEDNQLAFEEYERSWEQNEELGLNDMDTSSADVAYESTNTTKTE 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01642 503 NCBIfam ZPR1 zinc finger domain 40 222 IPR004457 GO:0008270
Pumo1g01642 503 NCBIfam ZPR1 zinc finger domain 295 486 IPR004457 GO:0008270
Pumo1g01642 503 FunFam Zinc finger protein ZPR1 28 83 - -
Pumo1g01642 503 FunFam Zinc finger protein ZPR1 285 339 - -
Pumo1g01642 503 Gene3D ZPR1, zinc finger domain 30 83 IPR042452 -
Pumo1g01642 503 Gene3D ZPR1, zinc finger domain 284 339 IPR042452 -
Pumo1g01642 503 PANTHER ZINC FINGER PROTEIN ZPR1 14 497 IPR040141 -
Pumo1g01642 503 FunFam zinc finger protein ZPR1 84 225 - -
Pumo1g01642 503 Coils Coil 134 154 - -
Pumo1g01642 503 MobiDBLite consensus disorder prediction 480 503 - -
Pumo1g01642 503 Gene3D ZPR1, A/B domain 84 225 IPR042451 -
Pumo1g01642 503 Gene3D ZPR1, A/B domain 340 482 IPR042451 -
Pumo1g01642 503 FunFam Zinc finger protein ZPR1 340 482 - -
Pumo1g01642 503 Pfam ZPR1 zinc-finger domain 38 197 IPR004457 GO:0008270
Pumo1g01642 503 Pfam ZPR1 zinc-finger domain 294 452 IPR004457 GO:0008270
Pumo1g01642 503 SMART zpr1 294 454 IPR004457 GO:0008270
Pumo1g01642 503 SMART zpr1 38 198 IPR004457 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01642 11 501 C2H2 Transcription Factor Family AT5G22480 75.610 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01642 K06874 - gmx:100798741 933.71