Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01632 ATGCATGAGCAGCAAAGGATCAGTGTTGTTGCTTCTTCCTCCAACTCCTCTTCTATGGTGTCTTCTAAAAATTATGATGTTTTTCTAAGCTTTCGAGGGGAAGACACCCGCAAGAACTTCACAAGCCATCTATATAAAGCTTTGAATGAAGAGAAAGTCAAAACCTACATAGATGACCAGCTCAAAAAGGGAGATGGAATCTCACCAACACTCATCAACGCTATCGAAAATTCTCGTATAGCTATTGTCATATTCTCAGAGAACTATGCTTCCTCAAAGTGGTGCTTGGGTGAACTTAGCAAGATTTTGGAATGCCAGAAAGTCCAAGGGCAGATTGTCATACATGTGTTTTATAACATAGATCCATCTCATGTGAGGAAGCAAACTGGGAGCTATGAGCAAGCCTTTGCAAAACATGGGGGAGATATCAGGGGCAACAAATGGAAAACTGCTATCACTGAAGAAGCCAATTTAGCTGGGTGGGACTATCAAACATACAGGACTGATCCTGAATTACTTAAGGACATTGTTGGAGATGTTTTGCAAAAGTTGCCTCCTAGATACCTAAACCAACATAAAGGACTCGTTGGATTTGAGGAAAATATTAAAAAGATTGAATCATTATTGAAAAGTCGATCAAGTGAAGTTAAGAAAACCATTGGAATATGGGGCATGGGTGGCATAGGTAAGACCACCCTTGCTACTGCTTTATATGACAAGCACTCTCATAAGTTTGAAGGTCGTTGTTTCGTTGCAAATGCAGGGGAAAAATCAAACAAACTCAAAGATTCTGAGATAAGTAGCCTTCGAGTAATTTCCTATTGCAACGGTAATCCTTTGGCTTTAAAAGTTCTGGGTGCAAGTCTTCGAAAAAGAAGTGAAGAGGCTTGGGAATGTGAATTGAAAAAACTCCACAAGATTCAGAAAATGGAAATTCACAATGTATTAAAATTAAGTTATGATGGCATAGATCCTTTTGAAAAGAACATATTTTTGGACATTGCATGCTTATTCAAAGGACAAAGAAGAGATTGGGTAACATGCCTACTGGAAGATTTTGGTTTCTGTCCAGCATCTAGGATAGAAGTCTTTTTAGATAAAGCTCTCATAACAATTTCATGTGACAATCAGATAGAAATGCATGGCTTGATACAGGAAATGGGTCGGACAATTGTTCATCAAGAATCTAAAGACCCTGGAAGACGAAGTCGATTGTGTAGACTTGAGGAAGTGCATGACACATTGAAACATAACAAGGGAACTGATGTTGTTGAAGGCATAATTTTAGATTAG 1293 0.3852 MHEQQRISVVASSSNSSSMVSSKNYDVFLSFRGEDTRKNFTSHLYKALNEEKVKTYIDDQLKKGDGISPTLINAIENSRIAIVIFSENYASSKWCLGELSKILECQKVQGQIVIHVFYNIDPSHVRKQTGSYEQAFAKHGGDIRGNKWKTAITEEANLAGWDYQTYRTDPELLKDIVGDVLQKLPPRYLNQHKGLVGFEENIKKIESLLKSRSSEVKKTIGIWGMGGIGKTTLATALYDKHSHKFEGRCFVANAGEKSNKLKDSEISSLRVISYCNGNPLALKVLGASLRKRSEEAWECELKKLHKIQKMEIHNVLKLSYDGIDPFEKNIFLDIACLFKGQRRDWVTCLLEDFGFCPASRIEVFLDKALITISCDNQIEMHGLIQEMGRTIVHQESKDPGRRSRLCRLEEVHDTLKHNKGTDVVEGIILD 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01632 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 334 IPR027417 -
Pumo1g01632 430 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 261 IPR044974 GO:0006952
Pumo1g01632 430 SMART till_3 24 158 IPR000157 GO:0007165
Pumo1g01632 430 Pfam TIR domain 24 190 IPR000157 GO:0007165
Pumo1g01632 430 Pfam NB-ARC domain 201 250 IPR002182 GO:0043531
Pumo1g01632 430 Gene3D - 185 315 IPR027417 -
Pumo1g01632 430 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 185 - -
Pumo1g01632 430 Gene3D - 21 184 IPR035897 -
Pumo1g01632 430 ProSiteProfiles TIR domain profile. 23 184 IPR000157 GO:0007165
Pumo1g01632 430 SUPERFAMILY "Winged helix" DNA-binding domain 311 415 IPR036390 -
Pumo1g01632 430 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 161 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01632 Pumo-Chr1 27669044 27671057 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01632 268 430 WRKY Transcription Factor Family AT5G45050 40.000 8.18e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01632 - - gsj:114424199 383.645