Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01628 ATGATCAATATAAGATTTCTCAAATTCTATAAGGGGAGGGGTAGGACATGCAATTTGCTCCTTCCTTCAGGTCTCGAATCATTGCCTAATAAATTAATGTACCTACAATGGGATGGATACCCTTCCAAGTCTTTGCCATCAACTTTTTCTCCTGACAATCTTGTCGTGCTTTCCATGATGGAAAGCCATGTTGAAAAACTTTGGGATGGAAAAAAGAGTCTTGCAAGCTTGAAAGAGATCAACCTCCGTGCCAGCAAAAAATTAACTAAGCTCCCAGATTTATCTCTAGCGCCAAATCTTGAAACTATAGATGTTTCTCATTGCACAAGTCTGCTTCATGTTCCCTTATCCATCCAATATGTCAAGAAGCTTCTTCTGTTTAACTTGGAATCCTGCAAGAGTCTTAAGAGTCTTCCAAGAAACATTCACTTGTCTCTTGAAATGTTCATTCTCAGACGCTGCTCAAGTCTTGATGAGTTTTCAGTGACTTCAGAGAACATGACACGCCTAGACTTGAGAGAAACAGCAATAACAAATTTCCCAGAATCAGTTTGGCAGCATCTGAACAAGCTTGTTTACTTGAATCTGGAATCCTGCAACAAGCTCAAGAGTCTTACAAGCAACATTCACTTAAAATCTCTTCAAAGCCTCAGTCTGAGAGATTGTTCAAGTCTTGAGGAGTTTTCTGTGACTTCGGAGAACATGGAATGCTTGAATTTGAGAGGGACATCAATAAAAGAATTGCCAATATCAGTTTGGCGCAATAACAAGCTTTTTACTTTGGTTCTTCATTCCTGTAAAAAACTTGTGAATTTTCCTGACAGACCAAAACTTGAGGATTTGCCTCTCATATTCAATGGGGTATCCTCCTATGAAAGGCCGAATATGAATGAACCATGGAATTTGTCATCCTTGACAGATTTATCTCTAAAAGGAAGCAGTATTGAGAATTTACCTGCAAGCATCAAAGATCTTCCTAGTCTGAAAAAGCTTACCTTAACTGAGTGCAAGAAACTTCGGTCTTTACCAAGCCTTCCACCATCCTTGGAAGACTTATCCTTAGATGAAAGTGGTATTGAGTGTTTACCTGTAAGTATCAAAGATCTTTCTCACTTGAAAAAACTTACCCTAACCAACTACAAGAAGCTTTTGTCTCCACAAGACCTTCTATCATCTTCAAAAACTTCATTACTAAATGAAAGTAAAGTTGATTCCCATCTTGTGAGCAAGAGAGGTCTTCCTCATCTACTGAAGTTTCCTCGGGTTAAGTGGAAAAGGTTTCATTCTCTACCAGAGCTTCCACCATTCTTGGAAGAATTTTCACTAAGTGAAAGCAATATTGAGTGCATACCTGAAAGCATAAAAAATCTTTCTCATCTGAGAAAACTAGCCTTAAAAAAGTGCACAGGGCTTCGGTATTTACCAGAGCTTCCACCATCTTTGGAAGATTTGTTTGTAAGTGGATGTGATATTGAAAGCTTGCCAATAAGCATCAAAGATCTTATTCATTTGCGAAAGATCACCTTAATTGAGTGCAAGAAACTCCAGGCTCTACCAGAGCTCCCACCATGCCTGCAATCATTTTGTGCAGCTGACTGCAGATCACTTGAGATTGTTCAAAGTTCAAAGACTGTCTTAATAGAAGATAGATATGCATTCTATTACAATTGCATAAACATGGATCAAAATTCATGCAACAATATCATTGCAGATGCACCCTTTGAGGAAGCTTATACTTCTTTGCAAGAAGGAACACCTCTTGGTCCTCTTATTTCTATTTGTTTGCCAGGAACTGAAATCCCAGACTGGTTCAGCTACCAATCAACAAATTCTTCACTGGACATGGAAATTCCCCAACAGTGGTTCAATGATTCAAAGTTCTTAGGTTTTGCTCTGTGCCTTGTAATTGGTGGCTTCCAACAAAACAGTTATGAAGGGTATGATCAAGATGTCAAGTGTTATCACTTTGTGAAGTCTGCCTTTAACTCTGACCCCAGTGTTCCCTTTCTTGGCCATTGCACAACTGTAATGCAGGTGCCAAGAGGTTTTAATTCAGATCATATATATATATGCTACTATCCCGCTTTTAATGCCTCCGTTCTGCAAGATTTCAAGGATTTAGGCATATACTATGATGCCAACAACTTGAGGCTCAGAGTCATCTTTAAATTTAAGGGTCCATCTCAACGGTTGGACATGGTAAAGAAGTGCGGGGTCAGACCTCTGTTGATTGCTAATACTGAAAGGCTTCACATAGAAAGTGAACTACAACCTGAATAG 2280 0.3904 MINIRFLKFYKGRGRTCNLLLPSGLESLPNKLMYLQWDGYPSKSLPSTFSPDNLVVLSMMESHVEKLWDGKKSLASLKEINLRASKKLTKLPDLSLAPNLETIDVSHCTSLLHVPLSIQYVKKLLLFNLESCKSLKSLPRNIHLSLEMFILRRCSSLDEFSVTSENMTRLDLRETAITNFPESVWQHLNKLVYLNLESCNKLKSLTSNIHLKSLQSLSLRDCSSLEEFSVTSENMECLNLRGTSIKELPISVWRNNKLFTLVLHSCKKLVNFPDRPKLEDLPLIFNGVSSYERPNMNEPWNLSSLTDLSLKGSSIENLPASIKDLPSLKKLTLTECKKLRSLPSLPPSLEDLSLDESGIECLPVSIKDLSHLKKLTLTNYKKLLSPQDLLSSSKTSLLNESKVDSHLVSKRGLPHLLKFPRVKWKRFHSLPELPPFLEEFSLSESNIECIPESIKNLSHLRKLALKKCTGLRYLPELPPSLEDLFVSGCDIESLPISIKDLIHLRKITLIECKKLQALPELPPCLQSFCAADCRSLEIVQSSKTVLIEDRYAFYYNCINMDQNSCNNIIADAPFEEAYTSLQEGTPLGPLISICLPGTEIPDWFSYQSTNSSLDMEIPQQWFNDSKFLGFALCLVIGGFQQNSYEGYDQDVKCYHFVKSAFNSDPSVPFLGHCTTVMQVPRGFNSDHIYICYYPAFNASVLQDFKDLGIYYDANNLRLRVIFKFKGPSQRLDMVKKCGVRPLLIANTERLHIESELQPE 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01628 759 SUPERFAMILY L domain-like 233 527 - -
Pumo1g01628 759 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 436 544 - -
Pumo1g01628 759 Pfam C-JID domain 595 740 IPR045344 -
Pumo1g01628 759 ProSiteProfiles Leucine-rich repeat profile. 190 212 IPR001611 GO:0005515
Pumo1g01628 759 Gene3D Ribonuclease Inhibitor 144 276 IPR032675 -
Pumo1g01628 759 Gene3D Ribonuclease Inhibitor 5 134 IPR032675 -
Pumo1g01628 759 Gene3D Ribonuclease Inhibitor 277 381 IPR032675 -
Pumo1g01628 759 SUPERFAMILY L domain-like 18 270 - -
Pumo1g01628 759 Pfam Leucine Rich Repeat 53 72 IPR011713 -
Pumo1g01628 759 Gene3D Ribonuclease Inhibitor 382 543 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01628 Pumo-Chr1 27411699 27415132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01628 445 519 WRKY Transcription Factor Family AT4G12020 37.333 4.59e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01628 - - gmx:100797269 1360.13