LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g01596	ATGGGGCGCGTGAGAACAAAGACGGTGAAGAAATCGTCCCGGCAGGTGATCGAGCGGCACTACTCGCGCATGACCCTGGACTTCCACACAAACAAGAAGCTTCTAGAAGAAGTGGCGATCATCCCGTCGAAGAGGCTCCGGAACAAGATCGCGGGGTTCTCGACCCATCTCATGAAGCGCATCCAGAAGGGCCCCGTGCGCGGCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCCGACGTCTCCGCCATCAACACCGACCACATCGAGGTCGACAAGGAGACCCTCGACATGCTCCACTCCCTCGGAATCAACGATATTCCCGGCATCACCCAGGTCGACCCCGTCCCTGTTCAGCAGACCTTCCCCTTCACCAGGAGAGAACCAGTTTGCAGTTCATAA	423	0.591	MGRVRTKTVKKSSRQVIERHYSRMTLDFHTNKKLLEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAINTDHIEVDKETLDMLHSLGINDIPGITQVDPVPVQQTFPFTRREPVCSS	140

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g01596	140	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Pumo1g01596	140	FunFam	40S ribosomal protein S17	1	62	-	-
	Pumo1g01596	140	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Pumo1g01596	140	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Pumo1g01596	140	PANTHER	40S RIBOSOMAL PROTEIN S17	1	128	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Pumo1g01596	140	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Pumo1g01596	140	Pfam	Ribosomal S17	1	120	IPR001210	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g01596	Pumo-Chr1	26963547	26965313	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo1g01596	1	122	Cytoplasmic Ribosomal Protein Gene Family	AT5G04800	87.705	3.31e-76	221

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g01596	K02962		-	gmx:100500063	265.003