Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01595 ATGTCTGATTCATTTGGTAGTACCTTTCACTCTTCCACTCCAAACTCCACCCACAATTCCCATGCACCCCCCAAAATCACCACATTCTGCTCAATAGCCCAACCTTATTGTATTTGCACCCACTGCAACCACATCCTCACCTTCAACCACCATGTTGGTAATGTAGCAGAGGAAGGGACAAATGGCCCAGGGTCCCATGTGCAGTCCCAACAAAGCACAAGGTGGAGTCCAACGCCAGTTCAGTTACTCGTCCTTGAGGAATTGTATAGGCAAGGCACCAAGACACCCTCAGCTGAACAAATTCAACAAATAGCTTCACAGCTGCGCCAGTTTGGGAAGATTGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAGGCCAGAGAGAGACAGAAGCGGCGGAGAAGGGAGATGGAGGAAAATAATAACAACAATAATAATAATAATGCTGCTTCTTCTTCTGGTGATCAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTGGACATGCAGAGGAATCTGCTGCACTGGATGTAGCAGAAAAGGGATCTAATGGGTGGACTCAGTTTGAGGAGAGAGGCATACAAGGTTTGAGGAGAAACATAGCAGAAAGACAAGCTATGTTGCAAGACATGGAAATGCCTTGTTACCCTCCCATTACTATTATGGCAGCTCCTACAACTTCTTCACACAGAACAACAACACATAACAACACACAACTTTTAACCCCTCAAAACTATAATTTACCATCTCTACTCAACAGAGAAAGTTTAAACTACTATGTTGAAGAAAATGCAGATCCTAGAACCCTTGACCTATTTCCACACAAGAGGGATGACCAAGATTCTATTTGTCTTGCTGAGAGGAAATCTATGATGTTCTGTGCCAGTGCTTCTATGGACACTGAAATCACCTCCAACCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTGA 990 0.4384 MSDSFGSTFHSSTPNSTHNSHAPPKITTFCSIAQPYCICTHCNHILTFNHHVGNVAEEGTNGPGSHVQSQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENNNNNNNNNAASSSGDQGLKETGCGVKETKKWASTSNCSGHAEESAALDVAEKGSNGWTQFEERGIQGLRRNIAERQAMLQDMEMPCYPPITIMAAPTTSSHRTTTHNNTQLLTPQNYNLPSLLNRESLNYYVEENADPRTLDLFPHKRDDQDSICLAERKSMMFCASASMDTEITSNQFFEFLPLRN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01595 329 Coils Coil 129 149 - -
Pumo1g01595 329 MobiDBLite consensus disorder prediction 143 160 - -
Pumo1g01595 329 Gene3D - 59 150 - -
Pumo1g01595 329 MobiDBLite consensus disorder prediction 57 76 - -
Pumo1g01595 329 MobiDBLite consensus disorder prediction 61 76 - -
Pumo1g01595 329 Pfam Homeodomain 72 132 IPR001356 GO:0003677
Pumo1g01595 329 ProSiteProfiles 'Homeobox' domain profile. 68 133 IPR001356 GO:0003677
Pumo1g01595 329 CDD homeodomain 73 128 IPR001356 GO:0003677
Pumo1g01595 329 MobiDBLite consensus disorder prediction 1 23 - -
Pumo1g01595 329 MobiDBLite consensus disorder prediction 130 163 - -
Pumo1g01595 329 SUPERFAMILY Homeodomain-like 65 136 IPR009057 -
Pumo1g01595 329 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 56 324 IPR044555 GO:0003700|GO:0099402
Pumo1g01595 329 SMART HOX_1 70 137 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01595 Pumo-Chr1 26942748 26944827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01595 72 329 Wox Gene Family AT3G18010 34.471 2.04e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pumo1g01595 Homeodomain 4.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01595 - - gmx:100788830 501.901