Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01580 ATGGGTCGAGAAATTGTTCATCAAGAATCTATTAAAGACCCTGGAAGACGAAGTCGACTATGGAAACATGAGGAAGTACATCACATATTGAAACATAACAAGGGAACTGATGTTGTTGAAGGCATAATTTTAAATTTGTATAAATTAACAGGGGATCTATATTTGAGCTCTGATTCCCTTGGAAAGATGACTAACTTAAGAGGTCTTGGAATCCATGGAGGATATGGGAACAAATTTAGTGTCTACCTTCCTAATGGTCTTGAGTCATTGCCTGATAAATTGAGGTGCCTATACTGGGCTGAATGCTGTCTTGAGTCTTTGCCAACTAACTTTTGTGCTGAACAGCTTCTAATGCTTTCCATGCCTCGTAACAAGCTTAAAAAGCTTTGGGATGGGGATCAGAATTTTATGAATTTAAAGAGAATTAACCTTGAGGATTCCCAAGACCCGATTGAGATCCCCGACTTATCTAAGGCAGAAAAACTTGAAAGTGTATATCTTGGTAAATGTCAAAGCTTGCGTCAGCTCCATCCATCCTTGTTATCTCACCCCAAGCTTAAATGCTTGGATTTAACTGACTGCAGAGAGATTGAAAGCCTTAATGTTCATACAAAATCTCTCCGAGTACTTCGTCTCCATGGTTGTTCATCTCTCAAGGAAATCTCAGTGACATCAGATGTACTTAAAAGTTTGGACTTCTCTGGATGTAGAGTGATTGAAAGCCTTAATGTTCATTCAAAATCTCTCCTTATACTTCGTCTCCATGGTTGTTCATCTCTCAAGGAAATCTCAGTGACATCAGATGTACTTAAAAATTTGGACTTATCTGGATGTAGAGTGATTGAAAGCCTTAATGTTCATTCAAAATCTCTCTATACAGTTGATCTCAGTGGTTGTTCATCTCTCAAGGAAATCTTAGTGACATCAGAGGAAATGTTGAGGTTGTACTTATCTGGCGCTGCTATATGTGCATTGCCGTCATCAATTGGTCACTTATTATCTTTAGAAGGGTTAGACCTAAGTGGAAATAATGTTGAGAGCTTGCCTGAAAACATAAAAAACCTTTCAATGTTGAGAAGGCTTTATTTGGATGATTGTTGA 1101 0.3806 MGREIVHQESIKDPGRRSRLWKHEEVHHILKHNKGTDVVEGIILNLYKLTGDLYLSSDSLGKMTNLRGLGIHGGYGNKFSVYLPNGLESLPDKLRCLYWAECCLESLPTNFCAEQLLMLSMPRNKLKKLWDGDQNFMNLKRINLEDSQDPIEIPDLSKAEKLESVYLGKCQSLRQLHPSLLSHPKLKCLDLTDCREIESLNVHTKSLRVLRLHGCSSLKEISVTSDVLKSLDFSGCRVIESLNVHSKSLLILRLHGCSSLKEISVTSDVLKNLDLSGCRVIESLNVHSKSLYTVDLSGCSSLKEILVTSEEMLRLYLSGAAICALPSSIGHLLSLEGLDLSGNNVESLPENIKNLSMLRRLYLDDC 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01580 366 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 243 366 IPR044974 GO:0006952
Pumo1g01580 366 SUPERFAMILY L domain-like 53 366 - -
Pumo1g01580 366 Gene3D Ribonuclease Inhibitor 311 366 IPR032675 -
Pumo1g01580 366 Gene3D Ribonuclease Inhibitor 226 310 IPR032675 -
Pumo1g01580 366 Gene3D Ribonuclease Inhibitor 16 225 IPR032675 -
Pumo1g01580 366 ProSiteProfiles Leucine-rich repeat profile. 334 355 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01580 Pumo-Chr1 25967124 25968473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01580 2 338 WRKY Transcription Factor Family AT4G12020 36.158 4.68e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01580 - - ccaj:109805276 402.905