Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01579 ATGCATGAGCAGCAAAGGATCAGTGTTGTTGCTTCTTCCTCCAAGTCTTCTTCTTTGGCATCTTCTAAAAAGTATGACGTTTTTCTAAGCTTTCGAGAGAACTATGCTTCCTCAAAGTGGTGCTTGGGTGAACTCAGCAAGATTTTAGAGTGCAAGAAAGTGCAAGGGCAGATTGTGATACCAGTGTTTTATGGCATAGATCCATCCCATGTGAGGAGGCAGACTGGGAGCTACGGGCAAGCCTTTGCAAAACACAAGGGAGATCCCAGGTGCTTCAAATGGAGAGATGATCTATCTGAAGCAGCCAATTTAGCTAGGTGGGGCTCTCAAACTTATAGGACTGATCCTGAATTACTCAAGGATATTGTTGGAGATATTTTGCAAAAATTGCCTCCTAGATACCCAAACCAACTTAAAGGACTGGTTGGAATTGACAAACATTATAAACAGATTGAATCATTACTAGAAATCGGGTCAAGTGAAGTTAGAACTGTTGGAGTATGGGACATGGGTGGCATAGGAAAGTCCACCCTTGCTACTGCTTTATATGAAAACCTGTCTGAAAAGTTTGAAGGTCGTTGCTTCCTTGCAAATGTAAGAGAAAAATCCGACAAGCTCAAAGATCGTGATAAGTCTGAGATAAGTTGGCTTCGAGGAAGTAGGGTCATTGTTACAACTAGAAATAAGCAAATATTTGGACAGGATGATAAAATATATTCGGTGGTAGAATTGAACTCTCATTACTCTCTTCAGCTTTTCTGTTTGACAACTTTTGGAGAAAAACAACCTAAAGAAGGATATGAAGATCTATCAAGAAGAGTGATTTCCTATTGCCAAGGTATTCCTTTGGCTTTAAAAGTTCTGGGTGCAAGCCTTCGTCCAAGGACTAGTAAAGAAGCCTGGGAATTTGAATTGAGAAAACTTCAAAAGATTCCAAATATGGAAATTCATAAGGTATTAAAATTAAGTTATGATGACTTAGATTGTTCTCAAAAAGACATCTTTTTAGACATTGCATGCTTCTTCAACAGATGGGAAAGAGATTGGGTAACAAGTCTATTAGAAGCTTGTGATTGCTTTCCAGCATCTGGGATAAAAGTCCTTTTGGATAAAGCTCTCATAGCAATTTCACATGGCAATAGGATACAAATGCATGACTTGATATAG 1167 0.389 MHEQQRISVVASSSKSSSLASSKKYDVFLSFRENYASSKWCLGELSKILECKKVQGQIVIPVFYGIDPSHVRRQTGSYGQAFAKHKGDPRCFKWRDDLSEAANLARWGSQTYRTDPELLKDIVGDILQKLPPRYPNQLKGLVGIDKHYKQIESLLEIGSSEVRTVGVWDMGGIGKSTLATALYENLSEKFEGRCFLANVREKSDKLKDRDKSEISWLRGSRVIVTTRNKQIFGQDDKIYSVVELNSHYSLQLFCLTTFGEKQPKEGYEDLSRRVISYCQGIPLALKVLGASLRPRTSKEAWEFELRKLQKIPNMEIHKVLKLSYDDLDCSQKDIFLDIACFFNRWERDWVTSLLEACDCFPASGIKVLLDKALIAISHGNRIQMHDLI 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01579 388 Pfam NB-ARC domain 218 325 IPR002182 GO:0043531
Pumo1g01579 388 ProSiteProfiles TIR domain profile. 1 130 IPR000157 GO:0007165
Pumo1g01579 388 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 107 IPR035897 -
Pumo1g01579 388 Pfam TIR domain 32 139 IPR000157 GO:0007165
Pumo1g01579 388 Gene3D - 132 214 IPR027417 -
Pumo1g01579 388 Gene3D - 31 131 IPR035897 -
Pumo1g01579 388 Gene3D - 243 328 IPR042197 -
Pumo1g01579 388 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 207 IPR044974 GO:0006952
Pumo1g01579 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 338 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01579 Pumo-Chr1 25965353 25967120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01579 142 388 WRKY Transcription Factor Family AT5G45050 31.879 2.97e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01579 - - gmx:100809480 509.99