Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01568 ATGGCGGTTTTACCAAGTAGCTCCTCTAGCTTGGAATTGACCATATCTGTCCCTGGCTTTGGTTCTTCACCAACCCTTCTTCCCTCATCATCTGTGAAAGAATTGGATATAAACCAAGTACCTCTAGAAGAAGATTGGATGGCATCAATCATGGAAGATGAAGATGAAAGCAGCAATGGAGATCCTCCTCGCAAGAAACTCCGTCTCACAAAGGAACAGTCTCGTCTCCTTGAAGAAAGCTTTAGACAAAACCACACTTTAAACCCAAAGCAGAAAGAGTCTTTGGCTATGCAACTGAAGCTGCGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAGTGCGAGTATCTGAAGAGGTGGTTCGGTTCCCTGACGGAGCAGAACCGAAGGCTTCAGAGGGAAGTGGAGGAGCTGAGGGCAATGAAGGTGGGCCCCCCCACCGTCATTTCCCCTCACTCCTGCGAGCCACTCCCAGCCTCCACACTAACCATGTGTCCCCGCTGCGAGCGTGTCACCACCACCATCACCACCACTTGCCGCCGACAAACCGCCCTCCACTAA 597 0.5176 MAVLPSSSSSLELTISVPGFGSSPTLLPSSSVKELDINQVPLEEDWMASIMEDEDESSNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLTMCPRCERVTTTITTTCRRQTALH 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01568 198 SUPERFAMILY Homeodomain-like 51 121 IPR009057 -
Pumo1g01568 198 Coils Coil 133 153 - -
Pumo1g01568 198 FunFam Homeobox-leucine zipper protein 18 49 125 - -
Pumo1g01568 198 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Pumo1g01568 198 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Pumo1g01568 198 Gene3D - 56 126 - -
Pumo1g01568 198 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 34 190 - -
Pumo1g01568 198 SMART HOX_1 62 124 IPR001356 GO:0003677
Pumo1g01568 198 CDD homeodomain 63 121 IPR001356 GO:0003677
Pumo1g01568 198 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Pumo1g01568 198 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Pumo1g01568 198 Pfam Homeodomain 64 118 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01568 Pumo-Chr1 25727962 25732054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01568 32 187 Homeobox Transcription Factor Family AT1G70920 65.839 1.04e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo1g01568 Homeodomain 3.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01568 K09338 - gmx:100775341 353.599