Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01553 ATGGTTGTTAAAGTGAGGAACAACATTGACAATTCTCAAAGGGTGCACTGGATGTCGAGAGCCAATGATGGGGTGATTGTAGTTACAACATTGATTCTTGTTGGAGCTGTTAAAGAAAGCCTCGTAGCCATGATTCTTGTTGGCTTCATAGGATTAATTTATGGGTCATTTATCGTGGCAATTGGAGAATTTGTGTCCATGTACAATAAGAGGGGCTATGATTGTTATGGTGTTGGGTTGTGGTTGTTACCTTCCTTTATAAACCACTCTTGTTGCCCCAATGCAAGGAGGTTGCATGTTTGGGACTACCTGGTGGTTCACGCTTCCAAGGATTTGAAGGCCGGTGAGGAGGTCATTTTTGCTTATTTTGACCCTTTGTGTGGTTTGAGCAAGAGGAATAAGATGTTAGTGAATTGGGGGATTCATTGCAAGTGCAAGAGGTGTTGGTTTGAGGGGGAAGTGTTCTCCAAACAAGAAATAAGAAAGATTAAGATTAGTCTTGAGAGACGAATGGATGGGGGGGGGGGGGGGGGAGTGGTGTATATGTTAGAGGAGTAG 558 0.4355 MVVKVRNNIDNSQRVHWMSRANDGVIVVTTLILVGAVKESLVAMILVGFIGLIYGSFIVAIGEFVSMYNKRGYDCYGVGLWLLPSFINHSCCPNARRLHVWDYLVVHASKDLKAGEEVIFAYFDPLCGLSKRNKMLVNWGIHCKCKRCWFEGEVFSKQEIRKIKISLERRMDGGGGGGVVYMLEE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01553 185 Pfam SET domain 77 122 IPR001214 GO:0005515
Pumo1g01553 185 CDD SET_SMYD 66 148 - -
Pumo1g01553 185 Gene3D SET domain 55 152 IPR046341 -
Pumo1g01553 185 ProSiteProfiles SET domain profile. 23 123 IPR001214 GO:0005515
Pumo1g01553 185 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 73 155 - -
Pumo1g01553 185 SUPERFAMILY SET domain 67 148 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01553 Pumo-Chr1 25529252 25530768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01553 6 75 Nodulin-like Gene Family AT3G25190 41.333 3.46e-12 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo1g01553 SET 2.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01553 - - gmx:100812233 195.667