Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01552 ATGGCCGGCGAACTCGCCGGAGACCACACGCCGGAGCTCCTGTGCCTGGTCCACGACATCGCCGGAATGTGCGCAGGCTCCTCCTCCTCCGGCGCCGCCATTGCCGCCGACGCCATGTTCCGCAAGGACTGCACCGATCTGGTTCGCCGGATCTCCCTCCTCACCCACCTCTTCGAGGAAATTAAGGAACTCAACAACAACGTTGTCGGTTCCGCTTCTCCTTCTTCTTCTTCTTCCTCTGAATCTTCGTGGTCCTCCGATCTGGTCCTCGCGCTTCACTCCGCAAGACGCTTGCTTTCCGTCGCTAGAAACTTCCGCTCCAACTGCTCCTCTGATGGAGCTGCAAAGACCATTGTCTTCCAATTTCAGTGTGTGACATGGAAATTGGAGAAACTGTTGAGCAATTTGCCGTATGACAATTTGGACATCTCAGAGGAAGTCAAGGAGCAGCCACTGGCTGAAGAAATTAGTCAGGTTCTTGGGAAATCTGTGAGTGGGTTGCAAAAACAACACAGCTGCCCTGAAAATTTATCTGAACTAGACAGCATTATTGTAACCAATGGAGAGAAAAGTTGCAGCACGAATCGGGCCGGATCTTGCTTGGAAAGAACAAGGAGCATCCCTTCTGAAGTTTCCTTGTTGAATGCAAGTTCTGATCCTGAAAGCCAAGAAATTTCTGAGACAAAGAGTCTTCCTGAGGTTAAAAAGCCTGAAGCAATTGTGATTCCTGAAGATTTTCTTTGCTCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTAGCCACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACACCAAATTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGCATAGAGCACAACATTGAGCAGCCAACTGGACTAACCAATGGGAAAATAAAGAAGAGTGACGGATCATTCAGAGATGTTACAGGTGACATTGCAGCAATCGAAGCTCTGGTCCGGAAGCTTTCTAGCCGATCCATTGAGGAGCGTAGAGCAGCCGTTACTGAGATTCGATCGCTATCCAAACGAAGCACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTGGTCAACCTTCTAACATCAGAAGATGTATTGACACAAGACAATGCAGTTACTTCAATTCTCAACCTCTCCATATATGAAAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGGGCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTCTTCAGCTTGTCACTTGCAGATGAGAACAAGATAATAATCGGCGCCTCAGGAGCCATACCGGCTTTGGTGGAATTGCTCCAAAATGGGAGTCCTAGAGGGAAGAAGGATGCAGCAACAGCATTGTTCAATTTATGCATTTATCAAGGGAACAAGGGCAGGGCCATTAGGGCAGGAATAATCACAGCATTGTTGAAGATGCTTACAGATTCAAGCAAATCGATGGTCGACGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAAGTTGCCATAGTAAAAGCCAGCACCATACCAGTTTTGATAGATCTTTTGAGGACCGGATTGCCGCGCAATAAAGAGAATGCAGCTGCTATTCTTCTTGCCTTGTGCAAGAGGGATGCAGATAATCTTTCTTGTATAAGCAGACTTGGATGCTGTCATACCTCTCTCTGA 1785 0.4672 MAGELAGDHTPELLCLVHDIAGMCAGSSSSGAAIAADAMFRKDCTDLVRRISLLTHLFEEIKELNNNVVGSASPSSSSSSESSWSSDLVLALHSARRLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLPYDNLDISEEVKEQPLAEEISQVLGKSVSGLQKQHSCPENLSELDSIIVTNGEKSCSTNRAGSCLERTRSIPSEVSLLNASSDPESQEISETKSLPEVKKPEAIVIPEDFLCSISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSSRSIEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLSCISRLGCCHTSL 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01552 594 CDD RING-Ubox_PUB 243 295 IPR045210 -
Pumo1g01552 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Pumo1g01552 594 SUPERFAMILY ARM repeat 341 584 IPR016024 -
Pumo1g01552 594 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 382 424 IPR000225 GO:0005515
Pumo1g01552 594 FunFam RING-type E3 ubiquitin transferase 241 316 - -
Pumo1g01552 594 FunFam RING-type E3 ubiquitin transferase 320 520 - -
Pumo1g01552 594 ProSiteProfiles U-box domain profile. 241 315 IPR003613 GO:0004842|GO:0016567
Pumo1g01552 594 Gene3D - 322 592 IPR011989 -
Pumo1g01552 594 SMART arm_5 535 575 IPR000225 GO:0005515
Pumo1g01552 594 SMART arm_5 453 493 IPR000225 GO:0005515
Pumo1g01552 594 SMART arm_5 412 452 IPR000225 GO:0005515
Pumo1g01552 594 SMART arm_5 371 411 IPR000225 GO:0005515
Pumo1g01552 594 SMART arm_5 494 534 IPR000225 GO:0005515
Pumo1g01552 594 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 464 506 IPR000225 GO:0005515
Pumo1g01552 594 Pfam U-box domain 242 313 IPR003613 GO:0004842|GO:0016567
Pumo1g01552 594 SUPERFAMILY RING/U-box 241 316 - -
Pumo1g01552 594 SMART Ubox_2 245 308 IPR003613 GO:0004842|GO:0016567
Pumo1g01552 594 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 340 382 IPR000225 GO:0005515
Pumo1g01552 594 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 505 547 IPR000225 GO:0005515
Pumo1g01552 594 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Pumo1g01552 594 Pfam Armadillo/beta-catenin-like repeat 454 492 IPR000225 GO:0005515
Pumo1g01552 594 Pfam Armadillo/beta-catenin-like repeat 372 410 IPR000225 GO:0005515
Pumo1g01552 594 PANTHER U BOX DOMAIN-CONTAINING 39 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01552 Pumo-Chr1 25517976 25520754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01552 38 588 U-box Gene Family AT1G23030 62.917 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01552 - - gmx:100815448 994.571