Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01549 ATGAGGAAGCCTAGTTGTGATATCAAACACTTGAACAAAGGAGCTTGGTCCAAACAAGAAGACCTGAAACTCATAGATTATATCAAGAAACATGGCGAGGTTTGTTGGCGTACACTCCCTCAGGCTGCAGGTTTACATAGGTGTGGTAAAAGTTGTAGGCTGAGATGGATAAACTATCTACGCCCAGACCTTAAAAGAGGAAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCGCTGCTAGGCAACAGGTGGTCACTAATAGCTGGGAGATTGCCTGGACGTACAGATAACGAAGTGAAGAATTATTGGAATTCTCATATAAGAAGAAAGCTCATTAGCAAAGGCATTGACCCAAATAATCATCGATTATTGAACCATAAAATCCCTTCCCTTGATCAGAATCCACCCATGTCTGATGATAGTTCAAAATCAACACCCTTTGGCATGAAAGACATTAATAACAACGAGACAAGTAAATCACCTCGTGTTTACATTAATTATGGTGAAGTCTCATCAGATGCTGCAAGTGGCGAGGCTGAGTCATCGTGTGCATTGCCAGATTTAAACCTTGATCTCTCTATATCCATTAATCCTTCAGCTTCACCTACTATTTCTGAAAACAATGTAAAACCGCTTCATGAAACTACTAATTCGTCAAGGAAACTGATGCATTTTGTTGATTCCCCTTCAACACTTGTTCTGTTTCAGTAA 723 0.3997 MRKPSCDIKHLNKGAWSKQEDLKLIDYIKKHGEVCWRTLPQAAGLHRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLISKGIDPNNHRLLNHKIPSLDQNPPMSDDSSKSTPFGMKDINNNETSKSPRVYINYGEVSSDAASGEAESSCALPDLNLDLSISINPSASPTISENNVKPLHETTNSSRKLMHFVDSPSTLVLFQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01549 240 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pumo1g01549 240 SMART sant 65 113 IPR001005 -
Pumo1g01549 240 SMART sant 12 62 IPR001005 -
Pumo1g01549 240 FunFam Transcription factor MYB7 68 165 - -
Pumo1g01549 240 MobiDBLite consensus disorder prediction 135 164 - -
Pumo1g01549 240 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pumo1g01549 240 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Pumo1g01549 240 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pumo1g01549 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Pumo1g01549 240 CDD SANT 68 111 IPR001005 -
Pumo1g01549 240 CDD SANT 15 60 IPR001005 -
Pumo1g01549 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Pumo1g01549 240 MobiDBLite consensus disorder prediction 131 164 - -
Pumo1g01549 240 Gene3D - 5 65 - -
Pumo1g01549 240 FunFam MYB-related transcription factor 12 65 - -
Pumo1g01549 240 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 177 - -
Pumo1g01549 240 Gene3D - 68 137 - -
Pumo1g01549 240 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01549 Pumo-Chr1 25445703 25447376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01549 2 200 MYB Transcription Factor Family AT4G38620 55.924 4.85e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo1g01549 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01549 K09422 - gmx:100814923 387.111