Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01545 ATGGGAAGAACCAAGTCCATTGTTTTCTTTACCTTCTTAGTTTGCTCTTTCTTACTACTTCACCTAGGGGTGGCACAAGAGGTAGCAAAATCTGAAAGTGAAGCATTAGGGGAACCAGAGAAAAGAGAAACACTTGAAATTATAATAGGTGGTGGTGGTTCCCCTGCTCCTTCTCCATCTTACCCTGCATGCCCACCTCCTCCTCCAAAACCACTGAGCCGGTTGGAGAAAGCAAAACGCGTGCTTCTCAAATTCAAAACCATCATCAACGATTCAACCTGTTACACGCAAAACTGGAACGAGAACACCGACGCATGTAAATTCAATGGGGTACGATGCGCCATATACCCAGACGCTAAAAAGGAGAGAGCAGTTGCAGGACTCGACCTAAACGGAGCAAGACTCGCCGGTCTAAACGGTTGCCAGTTGCCCCTCAAGGGTCTCGTGGACAGCATACCCGAGCTAACATTCTTCCACGTCAACTCCAACAACTTCGCCGATGGCGTCCCGAAGGGAATCACGACGTTCCCTTTTTTCTTCGAGCTTGATCTCAGTAACAACAAAATCGCTACCCAGTTCCCCATGGAAGCAATTCAGAACAACCAGTTAGTGTTCCTGGACCTCAGGTTTAACAATCTCACCGGCTCGATTCCCTCGCAACTCTTCGAGAGGGACCTGGACGTGATTTTCGTGAACAACAACAAGTTCACCGGCTGCCTCCCGCAGAATTTCGGCTCCACGCCGGCTCGGTACCTCACCTTCGCCAACAACAGGCTCACCGGTTCAATCCCTAAGAGTGTTGGCTTCGCACCGAATCTCACCGAAGTGCTCTTCTTGGGGAACCAGTTCGACGGGTGCCTGCCCTTCGAAATTGGTTACCTCAAGAAGGCAGTCGTGTTTGATGTAAGTAAAAATCTCTTAACCGGTCCGATTCCGCTCTCCTTCGGCTGCCTCAAGAGCATCCAGTATCTCAATTTGGCGCAAAACAAACTCTATGGTTGTGTTCCGGACAACCTTTGTCAGATCCCCAGTCTGCGCAACAATGGGAACCTGTCCTTGGCCGGAAATTATTTCAACGAGATAGGACCGTCGTGTTGGAGTTTGATTAAGTCCAAGGTGTTGGATGTGTCCAAAAATTGCATTCACGGGCTTCCAAACCAGAGGTCGCCACAAGAATGCTACGAGTTTTACAGAACAAAGAAGATATGTCCGAATCCGAATTCTTTTTACTATGTTCCGTGCAAATCTTACTGGGGGAAGCAGAGCAAGCCAACTGGTCCACCTTCTGAGCCGGTGACTTACAAGACTCTCAAGCCGCATCGTTTGAGATTGTGA 1335 0.4899 MGRTKSIVFFTFLVCSFLLLHLGVAQEVAKSESEALGEPEKRETLEIIIGGGGSPAPSPSYPACPPPPPKPLSRLEKAKRVLLKFKTIINDSTCYTQNWNENTDACKFNGVRCAIYPDAKKERAVAGLDLNGARLAGLNGCQLPLKGLVDSIPELTFFHVNSNNFADGVPKGITTFPFFFELDLSNNKIATQFPMEAIQNNQLVFLDLRFNNLTGSIPSQLFERDLDVIFVNNNKFTGCLPQNFGSTPARYLTFANNRLTGSIPKSVGFAPNLTEVLFLGNQFDGCLPFEIGYLKKAVVFDVSKNLLTGPIPLSFGCLKSIQYLNLAQNKLYGCVPDNLCQIPSLRNNGNLSLAGNYFNEIGPSCWSLIKSKVLDVSKNCIHGLPNQRSPQECYEFYRTKKICPNPNSFYYVPCKSYWGKQSKPTGPPSEPVTYKTLKPHRLRL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01545 444 Pfam Leucine rich repeat N-terminal domain 78 113 IPR013210 -
Pumo1g01545 444 Gene3D Ribonuclease Inhibitor 249 410 IPR032675 -
Pumo1g01545 444 Gene3D Ribonuclease Inhibitor 75 248 IPR032675 -
Pumo1g01545 444 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 429 - -
Pumo1g01545 444 SUPERFAMILY L domain-like 78 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01545 Pumo-Chr1 25412482 25413816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01545 74 396 Leucine-rich Repeat extension Gene Families AT4G13340 41.975 4.37e-74 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01545 - - gmx:100781948 696.041