Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01533 ATGGCTCAGGTTCAGGTTCCGCCTCAGAATGCGATTCCCGGTCCCAACGGTGCTGCCGGTGGCGCTGGAAACCAGTTCGTGACGACGTCGCTTTACGTTGGAGATCTCGAACCGAACGTCACGGACTCGCAGCTCTATGACTTGTTCAACCAATTGGGCCAAGTCGTGTCCGTTAGGGTTTGCAGGGATTTGACCAGCCGGAGATCGCTCGGTTATGGTTATGTCAACTATAGCAACCCGCAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTCTCAATAACAAGCCCATTCGTATTATGTATTCACATCGTGATCCCAGTATCCGTAAAAGCGGGGCAGGAAATATATTTATTAAGAATTTGGATAGGGCAATTGACCACAAGGCATTACATGATACCTTTTCTACATTTGGGAATATCCTTTCGTGCAAGGTAGCTACAGATTCATCAGGGCAATCAAAAGGCTATGGCTTTGTTCAATTTGATAATGAGGAATCTGCCCAAAAAGCCATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAACTAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAAGTGCTGTTGACAAGGCAAAATTCAACAATGTTTTTGTGAAGAATCTAGCAGAATCAACCACTGATGATGAATTGAACAACATTTTTGGTGAATTTGGAACTATTACTAGTGCTGTAGTGATGAGGGATGGAGATGGGAAATCAAAGTGTTTTGGATTTGTTAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTCTCAATGGCAAAAAATTTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGAATGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCCTAA 936 0.4338 MAQVQVPPQNAIPGPNGAAGGAGNQFVTTSLYVGDLEPNVTDSQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKLVYVGPFLRKQERESAVDKAKFNNVFVKNLAESTTDDELNNIFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGA 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01533 311 PANTHER RNA BINDING PROTEIN 28 91 - -
Pumo1g01533 311 FunFam Polyadenylate-binding protein 199 293 - -
Pumo1g01533 311 Gene3D - 22 118 IPR012677 -
Pumo1g01533 311 SUPERFAMILY RNA-binding domain, RBD 204 297 IPR035979 GO:0003676
Pumo1g01533 311 SMART rrm2_1 30 103 IPR003954 GO:0003676
Pumo1g01533 311 SMART rrm2_1 118 190 IPR003954 GO:0003676
Pumo1g01533 311 SMART rrm2_1 209 281 IPR003954 GO:0003676
Pumo1g01533 311 CDD RRM1_I_PABPs 30 109 IPR034364 -
Pumo1g01533 311 CDD RRM3_I_PABPs 207 286 - -
Pumo1g01533 311 FunFam Polyadenylate-binding protein 16 114 - -
Pumo1g01533 311 Gene3D - 119 205 IPR012677 -
Pumo1g01533 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Pumo1g01533 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Pumo1g01533 311 SMART rrm1_1 209 281 IPR000504 GO:0003723
Pumo1g01533 311 SMART rrm1_1 118 190 IPR000504 GO:0003723
Pumo1g01533 311 SMART rrm1_1 30 103 IPR000504 GO:0003723
Pumo1g01533 311 Gene3D - 206 309 IPR012677 -
Pumo1g01533 311 MobiDBLite consensus disorder prediction 284 303 - -
Pumo1g01533 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Pumo1g01533 311 FunFam Polyadenylate-binding protein 115 198 - -
Pumo1g01533 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Pumo1g01533 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Pumo1g01533 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Pumo1g01533 311 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Pumo1g01533 311 CDD RRM2_I_PABPs 115 191 IPR045305 -
Pumo1g01533 311 Coils Coil 283 307 - -
Pumo1g01533 311 MobiDBLite consensus disorder prediction 284 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01533 Pumo-Chr1 25163965 25167018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01533 1 311 Eukaryotic Initiation Factors Gene Family AT4G34110 73.899 7.02e-174 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01533 K13126 - gmx:100780329 574.704