Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01532 ATGAGAGACCCAAATGGCATAAGTCGTGGATCGGGATTTGTTGCATTCTCAACTCCTGAGGAGGCATCTAGAGCACTCTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTGGCCCAACGGAAAGAAGATAGGAGAGCTAGACTGCAGGCTCAGTTTGCTCAAATGCGACCTGTTGGAATGCCACCATCTGTTGGTCCTCGTGTGCCAATGTATCCCCCAGGTGGTCCAGGCATTGGTCAACAAATATTTTATGGCCAAGGCCCTCCTATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTTGTGCCAGGTATGAGGCCAGGTGCGGCTCCTGTGCCAAATTTCTTTGTCCCGATGGTTCAGCAGGGACAACAGGGACAGCGTCCTGGTGGAAGGCGTGCAGGTGCAGTCCAGCAGTCCCAGCAGGCAGTTCCAATGATGCCACAGCAGATGCTTCCTAGGGGGCGCATCTATCGTTATCCTCCTGGTAGGGGTATTCCTGATGTTCCTATGCCTGGGGTTGCTGGAGGTATGTTTTCTGTTCCATATGATGTGGGTGGGATGCCGCTGCGTGATGCATCACTCTCTCCGCAAGTTCCTATTGGGGCTTTGGCATCGGCTCTGGCTAATGCTTCTCCTGAGCAGCAGAGGACGATGCTCGGTGAGAATCTTTACCCCCTTGTGGAACAGTTAGAGCCTGATAACGCTGCCAAAGTGACAGGCATGCTTCTTGAGATGGACCAGACTGAGGTTCTGCATTTGCTGGAGTCGCCAGAAGCCCTGAAAGCAAAGGTGGCTGAGGCAATGGACGTCCTGAGGAATGTTGCTCAGCAGCAGCAGGCTGGCGGTGCGGCTGAGCAGCTGGGTTCTTTATCACTTAATGACAACCTTGTTTCTTAA 924 0.5238 MRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFYGQGPPIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRAGAVQQSQQAVPMMPQQMLPRGRIYRYPPGRGIPDVPMPGVAGGMFSVPYDVGGMPLRDASLSPQVPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGGAAEQLGSLSLNDNLVS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01532 307 Gene3D - 205 287 - -
Pumo1g01532 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 221 288 - -
Pumo1g01532 307 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 208 285 IPR002004 GO:0003723
Pumo1g01532 307 Pfam Poly-adenylate binding protein, unique domain 216 280 IPR002004 GO:0003723
Pumo1g01532 307 SUPERFAMILY RNA-binding domain, RBD 1 71 IPR035979 GO:0003676
Pumo1g01532 307 FunFam Polyadenylate-binding protein 204 286 - -
Pumo1g01532 307 SUPERFAMILY PABC (PABP) domain 149 300 IPR036053 GO:0003723
Pumo1g01532 307 SMART poly_2 220 283 IPR002004 GO:0003723
Pumo1g01532 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 46 IPR000504 GO:0003723
Pumo1g01532 307 Gene3D - 1 63 IPR012677 -
Pumo1g01532 307 MobiDBLite consensus disorder prediction 131 152 - -
Pumo1g01532 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 39 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01532 Pumo-Chr1 25162056 25163796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01532 1 60 Eukaryotic Initiation Factors Gene Family AT1G49760 41.667 9.48e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01532 K13126 - gmx:100780329 510.76