Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01527 ATGCAAGGTCAAAGGAGGACTGTTGGATCGTTCCCAGCAATTGTTAGTATGATGCAAGGACCCAGTTCTAGTGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGTGCAAAATGCAGTAGATTTCCGGTTGTCAGATTATAGGGGATCTTCTGGTGAGACTGCATGTTTACGTGGTACTGGTCATAATGTTCAGAGCTTCAGTGGCTGGAATACTGGTGAATCTAGTTCTAGACTGAATCTGATCAACCAAGTCAATGATGAAGGTCCAAAATCAGAACACGGGCTGTCTTCTTCTTGTAATGCTACCACCGAGGATGGTCTCAGGTCTGAGGAAAGACAATTTGAACCAAATAATGTAATTTTTCCTGTTAGTTCAAATACTAATCTACATGGCAATCAATCTAGAGTTCACCCTTCCTTTTTGCAAGGTTCCAGTTCAACTCATATTAGCCAGAATATTAGTCTAGATATGGGGCACGTTGCTAGCGCTGCTGATCGTGGGAAGGGCAAAGAAGCTGGTAGTAGTGCTTCATGTAATCACATAGGAGCTTCATCTGAAAGCTCTGGATACATGGCTTGGGGTGATAGTGCTAGTTCAGGTTCTTCTTTAGTTAATTGGGGTCCTTCCTGCAAGAGAAAGGCTCTTGAAGGTAGTTCTAGGCAACTGTGCTCTGGAGGAAGCTCAGGCACTCTTGTACAATCTGAAAATGGTTGCTGGCCTACTGATCCTGTTGATCTTAATGCTTCTAGCAGCTTAAGTGATTCTACACCTATAGAGGATATTCCCGTTACTAGTCCTCCATTATTGCAGAATGCAAGAAATGAAGTGAGACAAGAAGCTTCCAATGCATTTCCTTTGATAAGTATTGCAGAAAATGTGGAAAGGCCTCTAAGAAACTTCGATAGAAGAATGAGCCAACTACAGCATCAGGAATCTGTAACTCTGAATTTACCATCAACAGGGAGTGCTAGGCATCATAGTCATTCTTCTCTGCATCAAATACCTGGCTCTCACCCAATCAATGATTCATTGGAATTGAGGTTAACAGCTGGAGTGACATCTGCTAATTCTGGTGCTTCTCTGAACCAGTCACCTGCCATGCGCATCCATTCTTCTCCTTGGAACAGAAGTGCCAATCCTAGAGGGGCCAGATCTTCAACTTCTTATAACTCTGGAGAAAGAGCTGTCCGGGAAGATTTTAATTTGAGAATGTTTTCAAGAGATAGTACTGAGCACCCAATGAATGTGCCTGCATCTTCAGGACATGAACCTACTGGTTGGCATACACCAACTGGTAATGTGAATAATTCTGGAGGTGTACCTCCTCCATCCTGGATTGGATCTAGTTCAAATGTCCGCTCTCCCCCTAACCCTAGCTGGATTTTTAATCATGAAGTCCCAGCCGAAAATATGCAGAGTGTGTCAGAGTTCAGTCCTTGGTCCCTTTTTCCATCAATTAGCTCTGCATCTGGTGTTCATAATGGCCATTCTGCCCCATCTTCTGGTCCTCCTTCATTTACCCAGGGTTCTAGCAGCAACCAACCATATGTAAGAACAGCATTGTTGATGGAAAGAAGGGGTGGTGATGTTCTCTCTGGTCCCCATTCACTGCGAGCATTAACCTTTGACAATGAGGGGAGACGACGACTAATATCTGAGATTCGCCAAGTCTTGATGGCTATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCCTATATCATGGCATGGCTGAAATGCATGACAGGCACAGAGAAATGCGCCTCGATGTCGACAACATGTCTTATGAGGAGTTGTTGGCATTGGAGGAGCGCATAGGAGATGTGAGCACTGGATTGAGTGAGGAAGTCATTATTAAGTTGATGAAACAGCGAATTTATGTGCCTCTCATGACAGACTCTTCTACTGATCTTGAACCTTGCTGTATCTGTCAGGAGGAATTTGCTGATGGAGAGAATGTTGGATCACTGGATTGTGGGCATGTGTTCCACACTGGCTGCATCAAGCAGTGGCTAATGCAGAAGAACCTGTGCCCCATTTGCAAAACAACTGCCTTAGCTACATGA 2091 0.4424 MQGQRRTVGSFPAIVSMMQGPSSSGTDMNHQSSLNHVQNAVDFRLSDYRGSSGETACLRGTGHNVQSFSGWNTGESSSRLNLINQVNDEGPKSEHGLSSSCNATTEDGLRSEERQFEPNNVIFPVSSNTNLHGNQSRVHPSFLQGSSSTHISQNISLDMGHVASAADRGKGKEAGSSASCNHIGASSESSGYMAWGDSASSGSSLVNWGPSCKRKALEGSSRQLCSGGSSGTLVQSENGCWPTDPVDLNASSSLSDSTPIEDIPVTSPPLLQNARNEVRQEASNAFPLISIAENVERPLRNFDRRMSQLQHQESVTLNLPSTGSARHHSHSSLHQIPGSHPINDSLELRLTAGVTSANSGASLNQSPAMRIHSSPWNRSANPRGARSSTSYNSGERAVREDFNLRMFSRDSTEHPMNVPASSGHEPTGWHTPTGNVNNSGGVPPPSWIGSSSNVRSPPNPSWIFNHEVPAENMQSVSEFSPWSLFPSISSASGVHNGHSAPSSGPPSFTQGSSSNQPYVRTALLMERRGGDVLSGPHSLRALTFDNEGRRRLISEIRQVLMAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEEVIIKLMKQRIYVPLMTDSSTDLEPCCICQEEFADGENVGSLDCGHVFHTGCIKQWLMQKNLCPICKTTALAT 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01527 696 FunFam E3 ubiquitin-protein ligase MBR2 616 694 - -
Pumo1g01527 696 SMART ring_2 649 689 IPR001841 -
Pumo1g01527 696 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 208 694 IPR045191 GO:0061630
Pumo1g01527 696 ProSiteProfiles Zinc finger RING-type profile. 649 690 IPR001841 -
Pumo1g01527 696 MobiDBLite consensus disorder prediction 319 342 - -
Pumo1g01527 696 Pfam Ring finger domain 649 690 IPR001841 -
Pumo1g01527 696 MobiDBLite consensus disorder prediction 357 396 - -
Pumo1g01527 696 SUPERFAMILY RING/U-box 648 693 - -
Pumo1g01527 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 694 IPR013083 -
Pumo1g01527 696 MobiDBLite consensus disorder prediction 319 339 - -
Pumo1g01527 696 MobiDBLite consensus disorder prediction 412 455 - -
Pumo1g01527 696 MobiDBLite consensus disorder prediction 491 515 - -
Pumo1g01527 696 MobiDBLite consensus disorder prediction 357 397 - -
Pumo1g01527 696 MobiDBLite consensus disorder prediction 414 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01527 Pumo-Chr1 25088962 25092230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01527 18 696 C3H Transcription Factor Family AT2G15530 38.643 1.06e-117 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01527 - K19041 gmx:100809024 1316.6