Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01526 ATGGCCTTAACTGTAGAAGATCAAGGTTTGGATGATATAAACTTCTTATGGGAAAACCATTCATGGGGTCCCTCCAATTCTGATAACTCGGGTGAGAGTAAAGAAAACATGAAGTCATTAAACCAGAAAGAAGAAAGAGATGAAGCTCTTGTGAATAAGAAGCGGAATCGAGATGAGAGTAATATTACTAGTGGTGAAGGGAAAATTGAGAAGTGTCGTGAATCTGATCATGAAATGCATATATGGACCGAGAGAGAAAGGAGAAAGAAAATGAGGAACATGTTCGCCAATCTTCATGCTTTGCTTCCACATCTTCCTTCTAAGGCAGATAAATCAACTGTTGTCGATGAAGCCGTGACCTACATAAAAAATTTAGAGCAAACCCTCGAAAAGTTAGAGAAACAGAAACAAGAAAGGGTCCAATGTGTCTCCACTTTTGGATGTGAGTCATCTATGTTTGTCACTGGTCAGGGATTTTCTAATAACTTTTCCAACGCAATAATGAGAACTTCTTCAAACGCACTTTCATTTCCTGGGCACCAACCGGTAGTTTTTGATAAAACATGGGCTTCTTCAAATTTGGTCTTGAACATTTGTGGAGATGAAGCCCAATTCTCCATTTGTGCAGCCCATAAGCCAGGCCTCATGACCACCATCGCTTTTGTGCTGGAGAAGTACAAGATAGAGGTCATAACTGTCAACATTTCGTGCATTGGTAATGGAAATGCATGCATGATTCAAGCCCATGGAAAACGAGCTTCACATCAATTCCTAGATGCAAATTCAGTGGAGGAAATTTACAAACAAGCAGCAGGAGAGATTATGTTGTGTATCGCTTAA 840 0.4 MALTVEDQGLDDINFLWENHSWGPSNSDNSGESKENMKSLNQKEERDEALVNKKRNRDESNITSGEGKIEKCRESDHEMHIWTERERRKKMRNMFANLHALLPHLPSKADKSTVVDEAVTYIKNLEQTLEKLEKQKQERVQCVSTFGCESSMFVTGQGFSNNFSNAIMRTSSNALSFPGHQPVVFDKTWASSNLVLNICGDEAQFSICAAHKPGLMTTIAFVLEKYKIEVITVNISCIGNGNACMIQAHGKRASHQFLDANSVEEIYKQAAGEIMLCIA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01526 279 Gene3D - 72 145 IPR036638 GO:0046983
Pumo1g01526 279 MobiDBLite consensus disorder prediction 21 36 - -
Pumo1g01526 279 CDD bHLH_AtbHLH_like 80 133 IPR045239 -
Pumo1g01526 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 138 IPR036638 GO:0046983
Pumo1g01526 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 125 IPR011598 GO:0046983
Pumo1g01526 279 SMART finulus 83 131 IPR011598 GO:0046983
Pumo1g01526 279 MobiDBLite consensus disorder prediction 21 71 - -
Pumo1g01526 279 MobiDBLite consensus disorder prediction 37 71 - -
Pumo1g01526 279 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 25 277 IPR044278 GO:0003700|GO:0006355|GO:0009960
Pumo1g01526 279 Pfam Helix-loop-helix DNA-binding domain 80 126 IPR011598 GO:0046983
Pumo1g01526 279 Coils Coil 115 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01526 Pumo-Chr1 25078247 25080859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01526 18 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 38.462 3.90e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo1g01526 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01526 - - gmx:102665879 481.485