Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01522 ATGGCTACCCCAAGTAAATCGACACCAATAATACCTTCAGACACATTGGAACAGAAAGGGAAGACTATTACTGAATCAAATGCAAACATCCTTCAATGTCCTTTAAACCAGCAACTCCGTAGCTCCTTAGATGGCCCAGTAGCAATCCTTTGGGATATTGAAAACTGTCCTGTTCCATGTGATGTACGCCCTGAGGATGTGGCGGGTAATATAAGAATGGCTTTGCAGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATTCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGATGTTCCCAATGGGAGAAAAGATGCTGCTGATAAAGCTATCTTGGTTGACATGTTCTTATTTGCTCTTGACAACCCTCCACCATCCTCTATCATGCTTATATCTGGAGATGTTGATTTTGCACCAGCACTTCACATTCTTGGTCAGCGGGGATATACTGTAATTCTTGTCATCCCAGCTAACGTGGGTGTTTCTTCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTAGTGTGGTTCGTGGAGAAGGCTTTGTGCCCCCTTCGAAGGCTTTAGTGCCGCCCCGTGCAGGTCCAGCTGAGCTTGCTGGATATTTGATGGGATGCCATATCAATGACAACTCTGATGGACAAAATGAAGAAGAAGCAATAGTTTATAGAGGTATGTCACAGAGCTATTATAACTCAAAGGAATTCTCAATGGTGTCACAATCTCTGTCTGAATACAACTGTGGCACATCGAACACGACTTGCTTGCCAACAACTATGAGATCACACAGCCTTCCACCTATATTGAATGATGCTCAAGGAGGGTCTATGATGCCTTCAAGTGACCTTAATGAATGCCAGTTATGGGTACAGCCTGGGGATTTAAATGGTCTAAAGGGGCAGCTGGTAAGGTTGCTCGAACTTTCCGGAGGATGCCTGCCTCTGCCCCGAGTTCCAGCAGAGTACCAGAAATTTTATGGGAGACCTCTTTATGTATCTGAATATGGAGCAATAAAGTTGGTCAATCTTTTCAAGAAGATGGGTGATGCCATGGCTGTGGAAGGGAAAGGGAATCGTAAATTTGTTTATCTCAGAAACTGGAAGGCAGGCCCAAGTGCTCCTCCTCTCTCTCTGGCAAAGAAAGATAAGAAAGGAAAGGGAGCCCAGGAAGAGAATGTGAATAATATTGTCACTGGTGGATGCTCTTCAGACGAGTTCTCAGATGAAGAAAGAGTAGTCATAGAAGAACATGATGAAAGAAGTTGCATAGGAAAGGGCAATCAGGGGAGAGCAGCCAAATGTGAAGTTGATGACAGTGTTATTGAGCAGTTTAAGTATGAACTGCAAGAGATTCTGGTAAGCTATTCTTGTCGAATATTCCTAGGTTGTTTTGAGGCTATATACCAACAGCGATACAAGAAACAACTGGAATATCAGAGATTTGGTGTGGACAAGTTGGAAGATTTGTTTGAGAAAGTGAGTGATGTGGTGGTATTGCATGAGGAACCGGTAAGCAAGAGGAAGTTCCTGGCTGCTGTGGGCAGTTAG 1602 0.4401 MATPSKSTPIIPSDTLEQKGKTITESNANILQCPLNQQLRSSLDGPVAILWDIENCPVPCDVRPEDVAGNIRMALQVHPVIKGAVMMFSAYGDFNSFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPANVGVSSALCNAGKFVWDWPSVVRGEGFVPPSKALVPPRAGPAELAGYLMGCHINDNSDGQNEEEAIVYRGMSQSYYNSKEFSMVSQSLSEYNCGTSNTTCLPTTMRSHSLPPILNDAQGGSMMPSSDLNECQLWVQPGDLNGLKGQLVRLLELSGGCLPLPRVPAEYQKFYGRPLYVSEYGAIKLVNLFKKMGDAMAVEGKGNRKFVYLRNWKAGPSAPPLSLAKKDKKGKGAQEENVNNIVTGGCSSDEFSDEERVVIEEHDERSCIGKGNQGRAAKCEVDDSVIEQFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYQRFGVDKLEDLFEKVSDVVVLHEEPVSKRKFLAAVGS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01522 533 CDD PIN_limkain_b1_N_like 46 172 - -
Pumo1g01522 533 Pfam OST-HTH/LOTUS domain 459 521 IPR025605 -
Pumo1g01522 533 Pfam OST-HTH/LOTUS domain 314 379 IPR025605 -
Pumo1g01522 533 Gene3D - 455 525 IPR041966 -
Pumo1g01522 533 Gene3D - 312 381 IPR041966 -
Pumo1g01522 533 CDD LOTUS 313 382 - -
Pumo1g01522 533 Gene3D - 41 192 - -
Pumo1g01522 533 ProSiteProfiles OST-type HTH domain profile. 312 384 IPR025605 -
Pumo1g01522 533 PANTHER LIMKAIN B LKAP 23 496 IPR024768 GO:0005777|GO:0010468
Pumo1g01522 533 CDD LOTUS 459 521 - -
Pumo1g01522 533 ProSiteProfiles OST-type HTH domain profile. 458 532 IPR025605 -
Pumo1g01522 533 Pfam NYN domain 46 186 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01522 Pumo-Chr1 25001684 25005065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01522 43 273 C2H2 Transcription Factor Family AT5G61190 32.000 1.38e-27 115