Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01517 ATGAACTTCAGGAGCTACGGTGATAATAACAACCCCACTTGGGATGCCATGCATGGGAAGACACCAGCAAATGTTACTACTCTGCTGAGACAGCCCTCAACAATATACTCTCTAACATTTGATGAGTTGCAGAGCACTATGGGTGGGATTGGGAAGGATTTTGGGTCCATGAACATGGATGAACTCTTGAAAAACATCTGGACAGCTGAAGAGACTCAAGCCTTGGCATTTGCAGCTGGTGCAGCAGGAGGAGAAGGCCACAATAACCCAATTAGTGGTGGTTTGCAAAGACAAGGTTCTTTGACATTGCCAAGGACTCTTAGTCAGAAAACAGTTGATGAGGTTTGGAGGGACTTGATCAAAGATAGTGGTGGTGGGGCCAAGGATGGAAGTGGTGGCAATGGTGGTTCATCCATTCCTCAAAGGCAACCAACATTGGGAGAAATGACTTTGGAGGAGTTTTTGGTGAGAGCTGGGATTGTGAGAGAAGATGTGCCTCAACAACAACAAATTGGAAAACCAAATAACAACAATGGATGGTTTGGTGACTTTCCTAGACCAAACAATAACAACACTGGCTTACTTCTTGGGTTCCAACAACCAAATAGAAGCAATGGGAATTTGGGTGAGAACACTAACTTAGTTCCCAAACAACCTCTTCCTTTATCATTAAACTCAAACCATTCAAACCATTCCCAAAGACAAGCACAACTGCACCAACAGCCACCACCACTTTTTCCAAAGCCAGCAAATGTAGCTTTTGCTGCTCCTATGCATTTGTTGAACAATGCTCAACTTGCTAGCCCTGGCAGAAGAGGGTTGATTGGAGTTGGTGACCATCCAATGAATGTTGGAATGGTTGGTTTAGCCACAGCTAATGTCACAGCTTCTGGGGCTTCTCCCTCAAGGAAAATATCACCAGATGTAATTACAAGAAACAATATTGATAACTCTTCAATATCACCACATTATGTAATCAACAGGGGAAGGAAATTCAGTGCCATAGAGAAAGTGGTTGAGAGGAGACAAAGAAGAATGATAAAAAATAGAGAATCAGCTGCGAGATCGCGGGCTCGTAAGCAGGCCTACACTTTCGAACTAGAAGCTGAAGTTGCAAAACTTAAGGAAGTAAACAGAGAATTACAAAGAAAACAGAAAGAAATTATGGAAATGCAGAAAAATAAGGATTTTGACCCTGCATGCAGACCACGGGTAAGTAAAATACAATGCTTGAGAAGGACTCTTACTGGACCGTGGTAA 1260 0.4286 MNFRSYGDNNNPTWDAMHGKTPANVTTLLRQPSTIYSLTFDELQSTMGGIGKDFGSMNMDELLKNIWTAEETQALAFAAGAAGGEGHNNPISGGLQRQGSLTLPRTLSQKTVDEVWRDLIKDSGGGAKDGSGGNGGSSIPQRQPTLGEMTLEEFLVRAGIVREDVPQQQQIGKPNNNNGWFGDFPRPNNNNTGLLLGFQQPNRSNGNLGENTNLVPKQPLPLSLNSNHSNHSQRQAQLHQQPPPLFPKPANVAFAAPMHLLNNAQLASPGRRGLIGVGDHPMNVGMVGLATANVTASGASPSRKISPDVITRNNIDNSSISPHYVINRGRKFSAIEKVVERRQRRMIKNRESAARSRARKQAYTFELEAEVAKLKEVNRELQRKQKEIMEMQKNKDFDPACRPRVSKIQCLRRTLTGPW 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01517 419 CDD bZIP_plant_BZIP46 341 395 - -
Pumo1g01517 419 MobiDBLite consensus disorder prediction 165 242 - -
Pumo1g01517 419 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 339 396 - -
Pumo1g01517 419 MobiDBLite consensus disorder prediction 168 240 - -
Pumo1g01517 419 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 339 390 IPR004827 GO:0003700|GO:0006355
Pumo1g01517 419 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 344 359 IPR004827 GO:0003700|GO:0006355
Pumo1g01517 419 Gene3D - 339 396 - -
Pumo1g01517 419 SMART brlzneu 337 401 IPR004827 GO:0003700|GO:0006355
Pumo1g01517 419 Pfam bZIP transcription factor 341 393 IPR004827 GO:0003700|GO:0006355
Pumo1g01517 419 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 30 419 IPR043452 GO:0003700|GO:0045893
Pumo1g01517 419 MobiDBLite consensus disorder prediction 121 146 - -
Pumo1g01517 419 Coils Coil 364 394 - -
Pumo1g01517 419 SUPERFAMILY Leucine zipper domain 341 389 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01517 Pumo-Chr1 24914325 24918705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01517 29 419 bZIP Transcription Factor Family AT1G49720 49.877 1.32e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo1g01517 bZIP_1 3.6e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01517 K14432 - gmx:100776600 676.781