Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01506 ATGTCATCCAAATTGAATTTCATATCTAACATATCTCCTAGGAAGATACAATGGAGATTGAAGGTCCGCGTAATAAGATTATGGATTTTGCTTGAGTATAAAAATCCAAAGGAAATCAGCAGCATGGACATGCGTCTTCTTGATGGAAAGAATGGAAAAATTCATGCATCCATAAGAAAAACATATCTGGATAAGTTTCAGGAAGTTCTTAAAGAAGGAAATGCTTATTTCCTTGAAAATCTGTTGGTTGCTCAAAGCGATCTAAAGTTCAAAGCTACAAGCCATAAATTCAAGTTATCTTTTCTCTCAACAACTGTTTGTTCCCCTACAGAAGTTGATGAAATCTCATTTTATCATTTTGATTTCATGTCTTTCAAAGACATTTCGGCGTCATCAAAGATTGTTACACAACCAGAACCTGCTGAACAATATTGA 435 0.3425 MSSKLNFISNISPRKIQWRLKVRVIRLWILLEYKNPKEISSMDMRLLDGKNGKIHASIRKTYLDKFQEVLKEGNAYFLENLLVAQSDLKFKATSHKFKLSFLSTTVCSPTEVDEISFYHFDFMSFKDISASSKIVTQPEPAEQY 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01506 144 CDD RPA1_DBD_A_like 19 106 - -
Pumo1g01506 144 FunFam Replication protein A subunit 4 112 - -
Pumo1g01506 144 Gene3D - 4 109 IPR012340 -
Pumo1g01506 144 SUPERFAMILY Nucleic acid-binding proteins 7 109 IPR012340 -
Pumo1g01506 144 Pfam Domain of unknown function DUF223 46 128 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01506 Pumo-Chr1 24631204 24631882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01506 4 128 Core DNA Replication Machinery Family AT5G45400 29.457 1.98e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01506 - - tpra:123896123 105.531