Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01502 ATGTCTTCCTCTTCGTTCTCCCCCGCCACTCTCACCACCGAACAGGAACTCTCTGTCATCGTCGCCGCCCTCACCAACGTCGTCGCCGGCTCCACCTCCAGCTCCTCCGTCTCCGTCCCGGAATTCCGCCTCCCGCAGACCTCCGAGCCTCTCGCCGCCGCCAGCCTAGTGCCGCCGGCGAACATGGACACGTGTCGCGAGTGCAACATCGCGGGGTGCCTGGGATGCAACTTCTTCCCCGAGGAGAAGAAGAAGCAGAAGAGGGCCAAGAAGAAGTACAGGGGCGTGAGGCAGAGGCCCTGGGGAAAGTGGGCCGCGGAGATCCGCGACCCACGCCGTGCGGCCCGGGTCTGGCTCGGCACGTTCGAAACGGCCGAGGAAGCGGCCCAGGCCTACGACAAGGCTGCGATCGAGTTCCGCGGCCCACGGGCCAAGCTCAACTTCCCCTTGGTCGACGAGTCGCTGAGCTTGCAGCAGAGCGAGCTGGAGAGGGCTGCGACGACAGATGAGCAAATAAAGAACGAGAATCTCAATCAAGGTATGGAAATGGATTCATTCGGGAACAAGGAAACCGAATTCTGGGACAGGATCAACGAAGCGGATTTTCATCAGCTCATGATGATGATGGATTTTGCTGGAGATTCTTCCGACTCTGCCACCGGGAACACTCTCAGTTCCTGA 681 0.605 MSSSSFSPATLTTEQELSVIVAALTNVVAGSTSSSSVSVPEFRLPQTSEPLAAASLVPPANMDTCRECNIAGCLGCNFFPEEKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFETAEEAAQAYDKAAIEFRGPRAKLNFPLVDESLSLQQSELERAATTDEQIKNENLNQGMEMDSFGNKETEFWDRINEADFHQLMMMMDFAGDSSDSATGNTLSS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01502 226 CDD AP2 93 149 IPR001471 GO:0003700|GO:0006355
Pumo1g01502 226 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Pumo1g01502 226 PANTHER DNA-BINDING DOMAIN 55 167 IPR044808 GO:0003700|GO:0009873
Pumo1g01502 226 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Pumo1g01502 226 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Pumo1g01502 226 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Pumo1g01502 226 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Pumo1g01502 226 Gene3D AP2/ERF domain 91 151 IPR036955 GO:0003700|GO:0006355
Pumo1g01502 226 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Pumo1g01502 226 FunFam Ethylene-responsive transcription factor 2 91 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01502 Pumo-Chr1 24537050 24538435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01502 11 157 AP2-EREBP Transcription Factor Family AT4G34410 47.541 1.90e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo1g01502 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01502 - - gsj:114420690 385.185