Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01483 ATGTCCACCCCCATTACCCCCCGCCGCCGCCTCCCACCTCCTCCCACCACCACCATCCACCACAAACAATCCGCCGCCGCCGCCGCCGCCGCCTCCTCCTCCGACGAGATCAGGACCATCTGGCTCGGCGACCTCCACCATTGGATGGACGAGAACTACCTCCACAACTGCTTCGCTCACACCGGCGAGGTTGTGTCGGCCAAGGTCATTCGAAATAAGCAAACCGGTCAGTCTGAGGGATATGGATTCGTGGAGTTCTATTCGCGAGCGACAGCTGAGAAAGTCTTGCAGAACTATAATGGCACCATGATGCCCAATACAGATCAGGCATTTCGTCTGAATTGGGCCACATTCAGTGCCGGGGATAGGCGTTCTTCTGATGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATTGACGTTACTGATGCTATGCTGCAAGAGACTTTTGCTGGCCGATATTCGTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGCCGCTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGAACAAGGGCAATGACTGAAATGAATGGCGTTTATTGTTCTAGTAGGCCCATGAGAATAGGTGTTGCAACTCCCAAGAAAACTTATGGTTATCAACAACAATATTCTTCTCAAGCTGTGGTATTGGCTGGTGGACACTCAGCTAATGGTGCTGTGGCCCAAGGTTCCCAGTCTGAAGGGGATTTAAACAACACTACTATATTTGTTGGAGGGCTTGATTCTGATATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGATTTGTTCAATTTGCAGACAGAAAGAATGCTGAGGAAGCAATTCAGGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAACTGATTCCAATGGAGGCCATTATGGTGGTCAGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATATAGCCATGCAAACTGCTGCTGCAATTCAAGGGGCTTCCTAA 1107 0.486 MSTPITPRRRLPPPPTTTIHHKQSAAAAAAASSSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQETFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHSANGAVAQGSQSEGDLNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRTDSNGGHYGGQGYGGHGFAVRQNQDIAMQTAAAIQGAS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01483 368 CDD RRM2_SECp43_like 131 210 - -
Pumo1g01483 368 MobiDBLite consensus disorder prediction 1 20 - -
Pumo1g01483 368 FunFam Polyadenylate-binding protein RBP47B 119 222 - -
Pumo1g01483 368 Gene3D - 232 355 IPR012677 -
Pumo1g01483 368 Gene3D - 119 225 IPR012677 -
Pumo1g01483 368 FunFam Polyadenylate-binding protein RBP47 233 349 - -
Pumo1g01483 368 Gene3D - 37 117 IPR012677 -
Pumo1g01483 368 SMART rrm1_1 252 319 IPR000504 GO:0003723
Pumo1g01483 368 SMART rrm1_1 39 114 IPR000504 GO:0003723
Pumo1g01483 368 SMART rrm1_1 133 207 IPR000504 GO:0003723
Pumo1g01483 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 118 IPR000504 GO:0003723
Pumo1g01483 368 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 29 327 - -
Pumo1g01483 368 SUPERFAMILY RNA-binding domain, RBD 7 120 IPR035979 GO:0003676
Pumo1g01483 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 323 IPR000504 GO:0003723
Pumo1g01483 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 211 IPR000504 GO:0003723
Pumo1g01483 368 SUPERFAMILY RNA-binding domain, RBD 129 226 IPR035979 GO:0003676
Pumo1g01483 368 FunFam Polyadenylate-binding protein RBP47B 37 117 - -
Pumo1g01483 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 316 IPR000504 GO:0003723
Pumo1g01483 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 203 IPR000504 GO:0003723
Pumo1g01483 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 107 IPR000504 GO:0003723
Pumo1g01483 368 CDD RRM1_SECp43_like 39 119 - -
Pumo1g01483 368 SUPERFAMILY RNA-binding domain, RBD 242 347 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01483 Pumo-Chr1 24216944 24221018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01483 40 330 Eukaryotic Initiation Factors Gene Family AT4G34110 30.872 4.58e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01483 - - gmx:100814564 671.389