Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01479 ATGACAACAGCAATTGCTATTGAAGATGTGAGAAGGGAGGTGAAAATACTGCGAGCTTTGAATGGACACAGCAATTTGATACAGTTCTATGATGCATTTGAAGACCAAGATAATGTCTACATTGTAATGGAGTTATGTGAAGGGGGGGAGCTCTTAGATATGATATTATCAAGAGGTGGGAAATACTCTGAAGATGATGCAAAGGCTGTCATGGTACAGATACTAAATGTTGTTGCATTTTGTCATCTTCAGGGTGTGGTGCACCGAGATCTTAAGCCAGAGAATTTTTTATATGCTAAAAAGGATGAAAGTTCTGAGTTGAAAGCTATAGACTTTGGGTTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGATATTGTTGGAAGTGCATACTATGTGGCCCCTGAAGTTCTCCATAGATCTTATAGCACAGAGGCTGATGTGTGGAGTATAGGTGTGATAGCATATATTCTATTATGTGGTAGTCGCCCATTTTGGGCTCGAACAGAGTCTGGTATTTTTAGGGCAGTTTTGAAAGCTGATCCAAGCTTTGATGAAACACCGTGGCCATCTTTATCTTCAGAAGCTAAGGATTTTGTCAAACGCTTATTGAATAAGGATCCACGGAAGTGA 636 0.3962 MTTAIAIEDVRREVKILRALNGHSNLIQFYDAFEDQDNVYIVMELCEGGELLDMILSRGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYAKKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDETPWPSLSSEAKDFVKRLLNKDPRK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01479 211 Pfam Protein kinase domain 8 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01479 211 SMART serkin_6 3 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01479 211 FunFam CDPK-related kinase 1 2 50 - -
Pumo1g01479 211 Gene3D Transferase(Phosphotransferase) domain 1 52 211 - -
Pumo1g01479 211 CDD STKc_CAMK 6 211 - -
Pumo1g01479 211 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Pumo1g01479 211 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 211 - -
Pumo1g01479 211 SUPERFAMILY Protein kinase-like (PK-like) 6 211 IPR011009 -
Pumo1g01479 211 Gene3D Phosphorylase Kinase; domain 1 2 51 - -
Pumo1g01479 211 FunFam CDPK-related kinase 1 52 211 - -
Pumo1g01479 211 ProSiteProfiles Protein kinase domain profile. 1 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01479 Pumo-Chr1 24182455 24184575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01479 1 211 EF-hand Containing Proteins AT1G49580 88.152 4.35e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo1g01479 Pkinase 1.3e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01479 - K00924 gmx:100798913 422.165