Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01470 ATGGGTTCGGTTCCCGCAGAACTGAGCTTGGATTTGAGACCGAGTTTTGTCCCGAAAACCATCACCGATTTCCTCTGCCACCTCTCTTCCCTCCCCGACAAGCTCCCCACCCTCCACGATTTCCTCTCCCGTTTAGAAGACGAGCTCCGCAAGATCGACGCCTTCAAACGCGAACTCCCTCTCTCCATGCTCCTATTAAACGACGCAATTTCAGTTCTGAAGGCGGAATCGCAGAAATGCAGGCCGCCGGTGCTGGAGGAGTTCATTCCGTTGAAGAAAGAGCGTGATCAGAGCGATGACGACAATAATGACGACAACAACAACAACGAATGCAGGGATAAGAGGAATTGGATGAGTTCCGTTCAGCTCTGGAATAACAACACTACCACCACTAATAACAATGCCTCTGATCGCAAACAACAACTTCATAAATTAGAATCCAAGAAAAGTGAAGAAGGGCAATCTGTGGCTGAGGATCCTTTTCAGTCTTGTAGCAATAGAAATGGAGGGAGAAGGGCGTTTATGCCTTTTGCTAGGTACTCTTCTTCTGCATCGTCTGTGCCTTTGACAACAGTGGGACTTGGAGCTGCAACTAAAGAAGAGAAGGAAGAGAGTGTTGTTATGAATAGGCTTTCTCTTCTGACCACCCCTTCTTCTGTGAAAGAGGGGTGCGGTTCAAGGGGATCGAGAAGCAGTTCCAACAGGGCTCTTTCTTCTTCTTCTTCTCCTCCCACCGTTCAGCCGAGTTTGCGCACAGCATCATCACTTCAGCAGACTGCTAGGAAACAAAGGAGATGCTGGTCCCCTGAGTTGCACAGACGATTTGTTAATGCCTTGCAGAAGCTGGGAGGTTCTCAAGCAGCAACACCAAAGCAAATCAGAGAGCTCATGCAGGTTGATGGCCTTACTAACGATGAAGTGAAGAGTCATTTACAAAAATATCGACTTCATACACGGAGAGTTCCTGCTGCAAGTGGTAATCAGCCAGTTGTGGTTCTTGGAGGTTTGTGGATGTCTCAAGATCAGTACAATGACTCTTCAAAAGTTAGCAGTTCAGGGTCAGGTTCTCCTCAGAGCCCCCTTCATTTGGGTGCAGGGTCTCGAGGAGGGACATCCCCAACTGAAGGTGACAGCATGGAAGATGATGAAGATGCAAGATCCGAGAGTTATAGTTGGAAAAGTCATATGCACAAACCTGGAAAAGTTGATGTATAG 1215 0.4782 MGSVPAELSLDLRPSFVPKTITDFLCHLSSLPDKLPTLHDFLSRLEDELRKIDAFKRELPLSMLLLNDAISVLKAESQKCRPPVLEEFIPLKKERDQSDDDNNDDNNNNECRDKRNWMSSVQLWNNNTTTTNNNASDRKQQLHKLESKKSEEGQSVAEDPFQSCSNRNGGRRAFMPFARYSSSASSVPLTTVGLGAATKEEKEESVVMNRLSLLTTPSSVKEGCGSRGSRSSSNRALSSSSSPPTVQPSLRTASSLQQTARKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAASGNQPVVVLGGLWMSQDQYNDSSKVSSSGSGSPQSPLHLGAGSRGGTSPTEGDSMEDDEDARSESYSWKSHMHKPGKVDV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01470 404 MobiDBLite consensus disorder prediction 89 169 - -
Pumo1g01470 404 FunFam Myb family transcription factor 261 319 - -
Pumo1g01470 404 SUPERFAMILY Homeodomain-like 259 320 IPR009057 -
Pumo1g01470 404 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 23 394 IPR044787 GO:0003700|GO:0006355
Pumo1g01470 404 MobiDBLite consensus disorder prediction 89 112 - -
Pumo1g01470 404 MobiDBLite consensus disorder prediction 217 265 - -
Pumo1g01470 404 MobiDBLite consensus disorder prediction 343 361 - -
Pumo1g01470 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Pumo1g01470 404 MobiDBLite consensus disorder prediction 385 404 - -
Pumo1g01470 404 NCBIfam myb-like DNA-binding domain, SHAQKYF class 262 317 IPR006447 GO:0003677
Pumo1g01470 404 MobiDBLite consensus disorder prediction 217 264 - -
Pumo1g01470 404 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
Pumo1g01470 404 Gene3D - 261 319 - -
Pumo1g01470 404 MobiDBLite consensus disorder prediction 113 138 - -
Pumo1g01470 404 MobiDBLite consensus disorder prediction 343 404 - -
Pumo1g01470 404 MobiDBLite consensus disorder prediction 139 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01470 Pumo-Chr1 24089521 24092414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01470 6 338 G2-like Transcription Factor Family AT2G03500 41.176 7.80e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo1g01470 Myb_DNA-binding 3.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01470 - - gmx:100806237 610.527