Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01469 ATGAGTGTTGGGCCGGGAATGGATTTGCCGATCATGCATGACAGTGATCGCTATGAACTCGTGCGTGACATTGGTTCTGGGAATTTCGGTGTAGCCAGGCTCATGAGGGACAAGCACACCGAGGAACTTGTTGCTGTTAAGTATATTGAGAGAGGTGAAAAGATAGATGAAAATGTACAAAGGGAAATTATAAATCACAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTTATATTGACACCAACACATTTGGCAATTGTGATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGGCGGTTCAGTGAGGATGAGGCACGCTTCTTCTTCCAACAACTAATATCAGGGGTTAGCTATTGTCATGCAATGCAAGTATGCCATCGCGACTTGAAGTTGGAAAACACATTGTTGGATGGTAGCCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGCTATTCCAAGTCCTCGGTACTACATTCACAACCAAAATCTACAGTTGGTACCCCTGCATATATTGCTCCAGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCATATCCTTTTGAGGATCCAGAGGAACCTAAAAATTTCCGCAAGACAATACATAGGATTTTGAATGTTCAGTACTCAATTCCTGACTATGTTCATATATCTCCCGAGTGCCGTCATCTTATATCAAGGATTTTTGTTGCTGATCCTGCAAAGAGAATAACTATTCCTGAGATTAGAAACCACGAGTGGTTTTTGAAGAACCTTCCAAGTGATCTGATGGATGGGAATGGGAGTAGCAACAACCAGTTTGAGGAGCCTGATCAACCAATGCAAAGCATAGAAGAAATCATGCAGATAATTAAGGAGGCTACAATTCCTGCAGCTGGATCTGAGTCTCTGAACCATGATCTTACTGGTAGCTTGGATATTGATGAGGAAGACATGGATACAGATCCTGACCTTGACTTAGATAGCAGTGGAGAAATTGTGTATGCTATGTAA 1071 0.4248 MSVGPGMDLPIMHDSDRYELVRDIGSGNFGVARLMRDKHTEELVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLISRIFVADPAKRITIPEIRNHEWFLKNLPSDLMDGNGSSNNQFEEPDQPMQSIEEIMQIIKEATIPAAGSESLNHDLTGSLDIDEEDMDTDPDLDLDSSGEIVYAM 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01469 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Pumo1g01469 356 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Pumo1g01469 356 FunFam Serine/threonine-protein kinase SRK2E 9 93 - -
Pumo1g01469 356 Gene3D Transferase(Phosphotransferase) domain 1 94 282 - -
Pumo1g01469 356 ProSiteProfiles Protein kinase domain profile. 18 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01469 356 FunFam Serine/threonine-protein kinase SRK2E 94 282 - -
Pumo1g01469 356 Pfam Protein kinase domain 18 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01469 356 PANTHER SERINE/THREONINE KINASE 17 301 - -
Pumo1g01469 356 SMART serkin_6 18 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo1g01469 356 SUPERFAMILY Protein kinase-like (PK-like) 11 287 IPR011009 -
Pumo1g01469 356 CDD STKc_SnRK2-3 17 273 - -
Pumo1g01469 356 Gene3D Phosphorylase Kinase; domain 1 2 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01469 Pumo-Chr1 24065592 24070205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01469 17 280 CBL-interacting serine-threonine protein kinases AT5G25110 45.091 7.89e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Pumo1g01469 Pkinase 2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01469 K14498 - gmx:100806771 679.863