Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01455 ATGATAGCCAGCTCCTTCTGCAATGCTGATTCTATGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGAACATAAAAGGAGTCCCTGCTCTGTTGACCAAAGCAGTTATACTTCTATTGCATCTAATAAAAGGCAAAAGGCTGATTTATCGATCAGTACTAAGGAGAGGAAGGAGAAGATTGGCGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGAATACATAGGATTCCTTCATAAACAAGTTAAGCTGCTCAGTGCTCCATACCTTGAAAGTTCACCAGCAGCCAAGATGCAGGGTATGGAGCCATGCAGCCTGAGGAGTAGAGGGTTATGTCTTGTTCCTGTGCCATTTACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATTAAGACTACTACATCACCTAAATTTGAGAAGGATGTCTCCCAATTTCATTGA 507 0.4221 MIASSFCNADSMFSREEGIDVRKMMEHKRSPCSVDQSSYTSIASNKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQVKLLSAPYLESSPAAKMQGMEPCSLRSRGLCLVPVPFTIGVAESNGADIWAPIKTTTSPKFEKDVSQFH 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01455 168 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Pumo1g01455 168 Gene3D - 43 115 IPR036638 GO:0046983
Pumo1g01455 168 CDD bHLH_AtbHLH_like 53 104 IPR045239 -
Pumo1g01455 168 SMART finulus 53 102 IPR011598 GO:0046983
Pumo1g01455 168 FunFam Transcription factor bHLH113 family 46 122 - -
Pumo1g01455 168 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 135 - -
Pumo1g01455 168 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 110 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01455 Pumo-Chr1 23856616 23861620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01455 24 160 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 55.346 1.38e-54 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01455 - - gmx:100809747 321.242