Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01454 ATGACGAAGAAGGGTTTGATGGGTGGCTATGGCGTTACGGTGATTGTGGTGTTGGCTTTGAGTTTGTGTTTGGGTGCATCAGCGGAGCAACTCAGTTCAAGAGAATGCGAGAATCTCGGTTTCACCGGACTCGCTTTATGCTCTGACTGCAACACTCTATCCGAGTACGTCAAGGACAAAGAGTTGGTATCGGATTGTTTCAAGTGTTGCACCGAAGACTCCAATGATGCCACTACCAAGATTACTTACTCTGGAGCTTTGCTGGAAGTCTGCATGAGAAAACTTGTTTTCTATCCTGAAGTTGTTAGCTTTATTGAAGAGGAAAAAGATCAATTTCCATCAGTAAAAGTTCAATATGTTTTTAACTCTCCACCAAAGCTAATTATGCTGGATGATGTGGGTCAGCAAAAGGAAACAATCAGGATTGATAATTGGAAACGTGAGCATATACTGCAGTTCCTGCGAGAGAAGATGGTGCAGCCTAAAATGGATTCTCATACCAGTTTGGTGTATCTGATTAAGGTAGAACTATTCACTGCTAAGGATCTCGTTGGTGCAAGCTTAATTGGCAAACCGGATCCTTATGCTATCATTACATGTGGCAATGAAAAGCGATTCAGTTCCATAGTCCCTGGTTCAAGAAATCCAATGTGGGGTGAGGGCATGGGTGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTCCAGATCAATGTCACAATTTATGATTGGTATAAATTTTGCGAAAGTGCTGTTATTGGTTCAGTGACCATTCTAGTTAAAAGTGAAGGTCAAACTGGTCCAGTGTGGCATACTATGGATAGCCCATCAGGGCAGGTTTCTCTTCAAATAGAAACAATAAAACTACCTGCAAATGCTTCCAGATTAAATGGTTATGGAGGACCTGACTCTCGAAGAAGGATGCCACCCTTGGAAAGAAATATTCATCCAGACGAGGTTGTTGATCGTCTTGATTCTTGTGCACTTCAGATGATGTCATTCCCTTACCATGGTGATATGTATGTCTCAGCATGGCACATTTGTTTCCATTCCGATGTGTTGTTCTCAAAGCAAATGAAGGTGGTTATTCCATTTGAAGATATAGATGAGATTCAAACGAGTCAACAAGCATTGATTAATCCTGCTATAACAATTATTCTTCGCACGGGTGCTGGTGGACGTGGTGTCCCTCCTCTGGGAAGTCCTGATGGTAGGGTCAGATATATGTTTGTATCATTTCCGACATTTTGGAACAGGAATCGTGCATTCAAAAATCTACAGTGTGCAGCAAAGAATTTCCATGAAATGTTAAAAGCTGAGAAGGAAAATGCAGAGCCAGAGCTGCCTGCACATAGCAGTTCTGTCAGAGGAAGTAAGTTGCTGGATAAGGTTCCTGAAGAAAGCATGCCAAAAACCGGAAAACTTCAATCTTTTATCAAAGAAGAGGCTAATGATTGA 1458 0.417 MTKKGLMGGYGVTVIVVLALSLCLGASAEQLSSRECENLGFTGLALCSDCNTLSEYVKDKELVSDCFKCCTEDSNDATTKITYSGALLEVCMRKLVFYPEVVSFIEEEKDQFPSVKVQYVFNSPPKLIMLDDVGQQKETIRIDNWKREHILQFLREKMVQPKMDSHTSLVYLIKVELFTAKDLVGASLIGKPDPYAIITCGNEKRFSSIVPGSRNPMWGEGMGEEFNFSVDELPVQINVTIYDWYKFCESAVIGSVTILVKSEGQTGPVWHTMDSPSGQVSLQIETIKLPANASRLNGYGGPDSRRRMPPLERNIHPDEVVDRLDSCALQMMSFPYHGDMYVSAWHICFHSDVLFSKQMKVVIPFEDIDEIQTSQQALINPAITIILRTGAGGRGVPPLGSPDGRVRYMFVSFPTFWNRNRAFKNLQCAAKNFHEMLKAEKENAEPELPAHSSSVRGSKLLDKVPEESMPKTGKLQSFIKEEAND 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01454 485 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 171 284 IPR035892 -
Pumo1g01454 485 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 151 483 IPR044655 -
Pumo1g01454 485 SUPERFAMILY Thioredoxin-like 69 161 IPR036249 -
Pumo1g01454 485 Pfam GRAM domain 320 385 IPR004182 -
Pumo1g01454 485 Gene3D - 313 431 IPR011993 -
Pumo1g01454 485 Pfam C2 domain 173 271 IPR000008 -
Pumo1g01454 485 CDD C2 173 272 - -
Pumo1g01454 485 MobiDBLite consensus disorder prediction 441 485 - -
Pumo1g01454 485 SMART gram2001c 303 375 IPR004182 -
Pumo1g01454 485 Gene3D - 85 157 IPR038219 -
Pumo1g01454 485 ProSiteProfiles C2 domain profile. 153 273 IPR000008 -
Pumo1g01454 485 Gene3D C2 domain 158 287 IPR035892 -
Pumo1g01454 485 SMART C2_3c 172 272 IPR000008 -
Pumo1g01454 485 Pfam Sep15/SelM redox domain 86 157 IPR014912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01454 Pumo-Chr1 23842808 23854800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01454 160 261 C2H2 Transcription Factor Family AT4G21160 23.529 7.92e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01454 - - gmx:100813208 481.485