Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01453 ATGAACGTCACCGTTGTCGATTCCGCGCTCTTAGCGTTTCTCTTCCCCTCGCTGTGGGAGATCAAAGTCGCCGTCGCCGCCTCCGTCTTCGTCATCCTCGCCTACCGCTTCTTCGCCGTCCGGTCCGGACACCTCCTCGCCGATCCGTCGCTCGCCGATAATTCCGCCTCCGCCGCCGGGGATGTCGCCGACGATAAGGACAAGATGGGGCAGCCTAAAGTGGATTCTCAAGCCAGTTCGGCGTACCTGATCAAGTTAGAACTGTTGGCTGCCAAGAATCTTGTCGGTGCAAACTTAAATGGCACATCGGATCCTTATGCCATCATCACATGTGGCAATGAAAAGCGATTCAGTTCCATGGTCCCTGGTTCAAGAAATCCAATGTGGGGCGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTCCAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACTGTTCCAGTTGAAAGTGAAGGTCAAACTGGTGCAGTGTGGCATACTTTGGATAGCCCATCAGGGCAGGTTTGTCTTCATATAAAAACAATAAAACTATCTGGAAATGCTTCCAGGATAAATGGTTATGGAGGAGCCAACCCTCGAAGAAGGATGCCGCCCTCGGAAAGACAGGGGCCCACTGTAGTCCATCAAAAGCCAGGGCCTCTTCAAACTATATTTGATCTTCATCCAGACGAGGTTGTTGATCATAGTTATTCATGTGCACTTGAGAGGTCATTCTTGTACCATGGTCGTATGTATGTCTCAGCATGGCACATTTGTTTCCATTCCAATGTGTTCTCAAAGCAAATGAAGGTGGTTATTCCATTTCAAGATATAGATGAGATACGAAGGAGTCAACATGCATTTATTAATCCTGCTATAACAATTATTCTTCGCATGGGTGCTGGTGGACATGGTGTCCCTCCTTTGGGAAGTCCTGATGGTAGGGTCAGATATATGTTTGCATCATTTTGGAACAGGAATCATGCATTCAGAAATCTACACCGTGCAGCGAAGAATTTCCATGAAATGTTGGAGGCTGAGAAGAAGGAAAATGCAGAGTCAGAGCTGCGTGCAAATAGTAGTTCCGTCAGAGGAAATAAGTTAGTGGATAAGGTTCCTGAAGAAAGCATGCCAAAAACAGGAAAACTTCAACCTTTTATCAAAGAAGAGGCTTTAGTTGGTATATACAATGAAGTTTTTCCCTGCACAGCTGAGCAGTTTTTTAACTTATTATTAAATGACGGTTCAAATTTTACTAGCAAATATCGTTCAGTACGAAAGGACACTAATCTTGTGATGGGTCAGTGGCATACAGCAGATGAATACGATGGTCAAGTCCGAGAGATAACCTTCAGATCCCTTTGTAACAGCCCTATGTGCCCTCCGGACACGGCCATGACAGAGTGGCAACATCATGTTCTATCACCAGACAAGAAAAACCTGGTGTTTGAGACTGTACAACAGGCACATGATGTTCCATTTGGATCCTACTTTGAGGTACACTGTAAATGGAGCTTGGAGACAATTACTGAAAGCTCATGTACTCTGGACATAAAAGTGGGTGCACATTTCAAGAAATGGTGTGTTATGCAATCCAAAATAAAGTCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGATGTGATGTTAGATGTTGCTCGATCGTATGTAAAATCAAATACTCCTAATGACGAGGATGACAAGGCCTCTTCGCCCCCGGCAGCGACCGTGGAAAGCTAA 1776 0.4499 MNVTVVDSALLAFLFPSLWEIKVAVAASVFVILAYRFFAVRSGHLLADPSLADNSASAAGDVADDKDKMGQPKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLHIKTIKLSGNASRINGYGGANPRRRMPPSERQGPTVVHQKPGPLQTIFDLHPDEVVDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFQDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLHRAAKNFHEMLEAEKKENAESELRANSSSVRGNKLVDKVPEESMPKTGKLQPFIKEEALVGIYNEVFPCTAEQFFNLLLNDGSNFTSKYRSVRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLSPDKKNLVFETVQQAHDVPFGSYFEVHCKWSLETITESSCTLDIKVGAHFKKWCVMQSKIKSGAVNEYKKEVDVMLDVARSYVKSNTPNDEDDKASSPPAATVES 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01453 591 CDD C2 84 180 - -
Pumo1g01453 591 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 7 583 IPR044655 -
Pumo1g01453 591 Pfam GRAM domain 234 302 IPR004182 -
Pumo1g01453 591 Pfam C2 domain 85 179 IPR000008 -
Pumo1g01453 591 SMART gram2001c 231 297 IPR004182 -
Pumo1g01453 591 Gene3D - 232 351 IPR011993 -
Pumo1g01453 591 ProSiteProfiles VASt domain profile. 403 573 IPR031968 -
Pumo1g01453 591 PRINTS C2 domain signature 99 111 IPR000008 -
Pumo1g01453 591 PRINTS C2 domain signature 123 136 IPR000008 -
Pumo1g01453 591 PRINTS C2 domain signature 144 152 IPR000008 -
Pumo1g01453 591 ProSiteProfiles C2 domain profile. 68 180 IPR000008 -
Pumo1g01453 591 SMART C2_3c 83 179 IPR000008 -
Pumo1g01453 591 MobiDBLite consensus disorder prediction 570 591 - -
Pumo1g01453 591 Pfam VAD1 Analog of StAR-related lipid transfer domain 407 552 IPR031968 -
Pumo1g01453 591 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 82 193 IPR035892 -
Pumo1g01453 591 Gene3D C2 domain 66 197 IPR035892 -
Pumo1g01453 591 FunFam BAG-associated GRAM protein 1 isoform X2 232 351 - -
Pumo1g01453 591 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01453 Pumo-Chr1 23824421 23834028 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01453 71 168 C2H2 Transcription Factor Family AT4G21160 24.490 2.38e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01453 - - gmx:100789923 1138.64