Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01450 ATGGGAAAGAAGGGGAGTTGGTTTTCTGCAATCAAGAGAGTTTTCACACACCACTCCAAGGGGAAGCAGGATTCAGATAATAATAACAAAGGCACAAAAGAGAAGAAGAAAGGTCAAGGAAAACTAAAGCATGGAGAGACCAATTCATTCATCCCCCTCTTCAGAGAGCCAAGTAGCATTGAGAAAATCTTTGGGGACTTTGAAAGGGAGCAACAACTACTGGGGTTAAGGCCTGCCACTCCTCCTGAGAGACCAAAAACACCACCTTATGTCCCTCCAAGAGCTCCTTCTCCTAGGCCTCCCTCTCCAAGGGCTCCTTCTCCAAGGCCTCCATCTCCAAGGGCTGCTTCTCCCAGGGCGGCTTCTCCACGAGTTACCTCTCCCAAAGCCGCGTCTTCCCGGATTGCTCATCACCACAAGGAGGTTGGCTTCAGACCAGAACCAACTTTGAGACAACAGCATGCCTCAGCTACTAAGATCCAGGCTGTTTACAGAGGTTATATGGGCAGGAGGAGTTTTAGAGCTCTAAAGGGTCTGGTGAGGCTTCAAGGAGTGGTAAGAGGACAGAATGTGAAGAGGCAGACAGTAAATGCCATGAAACACATGCAGCTGTTAGTGCGAGTTCAATCTCAGATTCAGTCTCGAAGGATCCAGATGTTGGAAAACCAGGCACGATATCAAGCTGAGTTCAAGAATGATAAGGATGCAGCCAGTACCTTGGGCAAACTCGCTTCTGAAGCAGGCAATGAAGAGTGGGATGATAGCTTACTGACCAAAGAAGAAAGAGAGGCAAGATTGCAGAGGAAGGTGGAAGCAATCATCAAAAGAGAAAGAGCAATGGCATTTGCATATTCACATCAGCTATGGAAAGCCACTCCAAAATCAACTCACACCCCAGTGACAGCTACACAATCAGGTGGATTCCCTTGGTGGTGGAACTGGTTGGAAAGACAAGCACCTACAGCAACTCCACAAGAAAGCAAAGTCTTGAAGAATTTTCAAATCACACCTCCAAGACCATACTCAGAGCAAAAGACTAGTCCAAGACCTGGCTCCAGCACTCAAAGGCAGCAGCAGCAGCAGCCCCATTTTGCCTTTGATAACATGGACACTCCCACACCAAAGTCCACAAAATCAACCATTGTGACATCATCAAAACCGGCGCGAACGCCTGCATTTAGAACTCCTCAGGCAAACAGCTCAGGCTCGAAATATCCAAGACCAAGGGGTGTGGGGGCCAATTCACCTTTTGATGTGCCATTGAAGGATGATGAAAGCCTCACAAGTTGCCCACCATTTTCAATGCCAAACTACATGGCTCCAACCCTTTCTGCCAGGGCCAAGGTACGTGCAAATAGTAATCCTAGAGAAAGGCTTGGTGGAAGTGGAACTCCAACAAGTACTGATTCAAAGAGGAGGCTCTCATTCCCTTTGCCACAAGGAATTGGATCTTTCAAGTGGTCTAAAGGGTTCTCAAGCAAGGATCAAAGGGTGCCAGATAAATTTCAGTCACTTGAATCCATAGGAAACGTGAGTGTGGATTCAATGGTGTCTTTGCCCGCAAGGGTGGGGGGAAGAAAGCCTTTTACAAGATTTGTGTGA 1602 0.4757 MGKKGSWFSAIKRVFTHHSKGKQDSDNNNKGTKEKKKGQGKLKHGETNSFIPLFREPSSIEKIFGDFEREQQLLGLRPATPPERPKTPPYVPPRAPSPRPPSPRAPSPRPPSPRAASPRAASPRVTSPKAASSRIAHHHKEVGFRPEPTLRQQHASATKIQAVYRGYMGRRSFRALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQAEFKNDKDAASTLGKLASEAGNEEWDDSLLTKEEREARLQRKVEAIIKRERAMAFAYSHQLWKATPKSTHTPVTATQSGGFPWWWNWLERQAPTATPQESKVLKNFQITPPRPYSEQKTSPRPGSSTQRQQQQQPHFAFDNMDTPTPKSTKSTIVTSSKPARTPAFRTPQANSSGSKYPRPRGVGANSPFDVPLKDDESLTSCPPFSMPNYMAPTLSARAKVRANSNPRERLGGSGTPTSTDSKRRLSFPLPQGIGSFKWSKGFSSKDQRVPDKFQSLESIGNVSVDSMVSLPARVGGRKPFTRFV 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01450 533 ProSiteProfiles IQ motif profile. 153 181 IPR000048 GO:0005515
Pumo1g01450 533 MobiDBLite consensus disorder prediction 322 419 - -
Pumo1g01450 533 MobiDBLite consensus disorder prediction 322 404 - -
Pumo1g01450 533 MobiDBLite consensus disorder prediction 81 117 - -
Pumo1g01450 533 MobiDBLite consensus disorder prediction 17 43 - -
Pumo1g01450 533 Gene3D - 134 173 - -
Pumo1g01450 533 PANTHER IQ-DOMAIN 5-RELATED 1 479 - -
Pumo1g01450 533 MobiDBLite consensus disorder prediction 457 474 - -
Pumo1g01450 533 SMART iq_5 152 174 IPR000048 GO:0005515
Pumo1g01450 533 Pfam IQ calmodulin-binding motif 154 174 IPR000048 GO:0005515
Pumo1g01450 533 Pfam Protein of unknown function (DUF4005) 384 484 IPR025064 -
Pumo1g01450 533 MobiDBLite consensus disorder prediction 447 474 - -
Pumo1g01450 533 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01450 Pumo-Chr1 23780405 23786575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01450 1 532 IQD Protein Family AT3G59690 51.150 2.82e-161 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01450 - - gmx:100814804 825.854