Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01439 ATGTATCAAATCGTGTCACCACCACTGCGTACCACATTGCGCCCTCCATTGTCGGCGTTGCTAGTGGTGTCGTCGACATTGGATGACATTCAGTGTACTAAGAAAGAGAATGAACTTATCATAAAGGAGGTGGAAAACAATGAGAAAAGTCTTAGGTTTGATATTTTCACTACTAGCTTATTAAAAAAGCAGAAAAGCCACAAGTCAAAGAAAGGAAGCAGTGACAAGGATGGGGAAGCAGCAGTGGCTCTTCCACCAATAGAAGATGTTAAATTGATTGAGGCAGAGAAGGAACAGAGCAAGCGTGCTGCTTCATTGGCTTTTGCCACAGCTGTTGCAGCAGAGGCTGCTGTTGCTGCTGCTCAGGCTGCTGCAGAGGTTGTTCGTCTCACAAGCATGCCTCATTACACTGGAAAGACTAAGGAAGAAATTGCAGCCATCAAGATTCAGACCGCATTCCGTGGATATATGGCAAGAAGGGCATTGCGTGCCTTGAGAGGTTTGGTGAGGCTGAAAACATTAGTACAAGGGCAATCTGTTAAACGGCAAGCTACTAGCACCCTACGAAGCATGCAAACACTAGCAAGATTACAGTCTCAGATTCGTGAAAGGAGAATTAGAATGTCTGAAGAGAATCAAGCTCTTCAGCGCCAACTACAGCAGAAACATGAAAAAGAGCTTGAGAAGCTGCGTGCTGCTGTGACTGTAGGAGAAATTTCTCAGGAAAAGCATTCTTTGCAGGCTGGAGAAGAATGGGATGATAGCTTGCAGTCAAAGGAGCAAATTGAAGCAAAATTGTTGCACAAGCAAGAAGCTGCTTTGAGAAGAGAGAGGGCTTTGGCCTATTCATTCTCACATCAGCAAACATGGAAGGGTTCTTCAAAATCATTGAATCCCACATTTATGGATCCAAACAATCCCCAATGGGGGTGGAGTTGGCTAGAGAGATGGATGGCTACTAGGCCATGGGATGGCCATAGCATTGTGGACCACAAAGATCAAGCATCTGTGAAGAGTGCAGCAAGCCATGCTATGTCTGTAGGAGAAATCACCAAATTGTATTCTCTCCAAGATAAAAGACCTTCCCCTTTTGGCCAAAAAGCAAGAAGACCTGCCCCTCAAAGTTCCCCTTCAAAGGCACCATCTGCTAATAATGGCAAGGCAAGGCCATCATGCTCAAAGGGTTGTAGTAGTAGTGTCTGGGGTGGAGATGAGGACTCAAGAAGCATGTTTAGTGTTCAGTCAGAGCGCTATCGCCGACACAGCATTGCAGGATCCTCAGTGAGAGATGATGAGAGCCTTGCAAGCTCACCTGCCATTCCAAGTTACATGGCACCCACAAGCTCAGCAAAGGCCAGGTCCAAAATCATAAGGCCTTCACCTGAAAAAGGAGGTGCTGCTGTTTCTGCAAGGAAGCGCCTTTCTTTCTCTCCTTCTTCTGCTGCTGCTTCAAGAAGGCATTCTGATCCTCCTAAGGTGGAAATGGTTTCCAATAAGGATGCTGCTGCCATAGTAAGCAATGGAAGGGGAAGGTAG 1536 0.4622 MYQIVSPPLRTTLRPPLSALLVVSSTLDDIQCTKKENELIIKEVENNEKSLRFDIFTTSLLKKQKSHKSKKGSSDKDGEAAVALPPIEDVKLIEAEKEQSKRAASLAFATAVAAEAAVAAAQAAAEVVRLTSMPHYTGKTKEEIAAIKIQTAFRGYMARRALRALRGLVRLKTLVQGQSVKRQATSTLRSMQTLARLQSQIRERRIRMSEENQALQRQLQQKHEKELEKLRAAVTVGEISQEKHSLQAGEEWDDSLQSKEQIEAKLLHKQEAALRRERALAYSFSHQQTWKGSSKSLNPTFMDPNNPQWGWSWLERWMATRPWDGHSIVDHKDQASVKSAASHAMSVGEITKLYSLQDKRPSPFGQKARRPAPQSSPSKAPSANNGKARPSCSKGCSSSVWGGDEDSRSMFSVQSERYRRHSIAGSSVRDDESLASSPAIPSYMAPTSSAKARSKIIRPSPEKGGAAVSARKRLSFSPSSAAASRRHSDPPKVEMVSNKDAAAIVSNGRGR 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01439 511 Gene3D iswi atpase 139 178 - -
Pumo1g01439 511 SMART iq_5 141 163 IPR000048 GO:0005515
Pumo1g01439 511 MobiDBLite consensus disorder prediction 355 406 - -
Pumo1g01439 511 PANTHER IQ-DOMAIN 5-RELATED 68 492 - -
Pumo1g01439 511 MobiDBLite consensus disorder prediction 420 511 - -
Pumo1g01439 511 MobiDBLite consensus disorder prediction 369 406 - -
Pumo1g01439 511 Coils Coil 27 47 - -
Pumo1g01439 511 Pfam IQ calmodulin-binding motif 145 163 IPR000048 GO:0005515
Pumo1g01439 511 ProSiteProfiles IQ motif profile. 142 170 IPR000048 GO:0005515
Pumo1g01439 511 Coils Coil 194 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01439 Pumo-Chr1 23614344 23623134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01439 83 510 IQD Protein Family AT5G03040 48.879 5.33e-119 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01439 - - gmx:100809448 655.981