Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g01428 ATGAGAATCATGGCGTGTTATTCCCAATTCTATGTGGTTTTGCTCTTGTCCATTTTTGTGGGAATTTGCATAGCTTCTCCAATAGAGGAACAAGAAAGGGATAGGATTATCAAGCTGCCAGGACAACCAGAGAATGTGCTATTTGCTCAGTACTCAGGCTATGTGACTGTGGATGAGGAAGCTGGGAGAGCATTGTTTTATTGGCTGGTTGAGACACCAGCTAGTATTGAACCAAGTTCAAGGCCACTAGTGTTGTGGCTTAATGGTGGCCCTGGATGCTCCTCTATTGGTTATGGAGCAGCTGAAGAACTTGGCCCTTTTAAAATTAATTCTGATGGGAAAACACTTTACTCCAATCCTTATGCTTGGAACAATTTGGCAAATATACTCTTCCTTGATTCTCCTGCCGGTGTTGGCTTTTCATATTCTAACAAAACATCAGACCTGTATACAGCAGGTGACCAAAGAACAGCTGAAGATGCATATACATTCCTAGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCACAGAGATTTCTACATTGCTGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGTCTCAACTTGTTTACCGGAGAAATAAAGGAATCGAGAATCCAGATATAAATTTCAAGGGCTTTATGGTTGGAAATGCTGTCATTGATGATTTCCATGATTACATTGGAACATTTGAGTACTGGTGGGTGAATGGTTTGATTTCAGATTCCACATATAAGAAGCTGGGAATTGCTTGTGACTTTGATTCTGCTCAGCATCCACCAGAGAATTGCGTGGAAGCTTTCGAAATTGCAAGTGTGGAGCAGGGAAACATTGATCCATACAGCATTTATACACCACCATGCAATGATATATCAACACTCAAACGCCGTTTGGGGGGTCGCTATCCATGGTTGTCTCGAGCATATGATCCCTGTACTGAGAGGTACTCTGTCTTGTATTTCAATCGTCCAGAAGTTCAGAAGGCACTTCATGCCAATGTAACTGGGATTCCTTATTCATGGGCGGGATGCAATGATATTATTGTGGAAAATTGGGGTGATTCTCCGCTATCTATGCTTCCAATATATCAAGAACTTCTGGAAGGTGGTATCAAGATATGGGTATTCAGTGGAGACACTGATTCAGTGGTTCCTGTAACGGCAAGTCGGTATTCAGTTGGTGCCTTGAATCTATCTACCATTGCCAATTGGTACGCTTGGTATGACAATGGCGAGGTTGGTGGCTGGAGTCAAGTTTATGAGGGTCTTACATTGGTTACAGTAAGAGGGGCAGGGCACGAGGTTCCACTTCATAAACCTCGTCAAGGTTTGGTTCTTTTCAAGTCATTCTTGGAGAACGAGCACATGCCATTGCCAAGTGAAAGCAAGCTTACTGGCCCAACTCGATCACTGGACAATAACATTCGATTGGCTCGGCCCAATCGGAAGATCACTATGCCATCATCGATGCAGGGCACTACTTCTTAG 1494 0.4297 MRIMACYSQFYVVLLLSIFVGICIASPIEEQERDRIIKLPGQPENVLFAQYSGYVTVDEEAGRALFYWLVETPASIEPSSRPLVLWLNGGPGCSSIGYGAAEELGPFKINSDGKTLYSNPYAWNNLANILFLDSPAGVGFSYSNKTSDLYTAGDQRTAEDAYTFLVNWFERFPQYKHRDFYIAGESYAGHYVPQLSQLVYRRNKGIENPDINFKGFMVGNAVIDDFHDYIGTFEYWWVNGLISDSTYKKLGIACDFDSAQHPPENCVEAFEIASVEQGNIDPYSIYTPPCNDISTLKRRLGGRYPWLSRAYDPCTERYSVLYFNRPEVQKALHANVTGIPYSWAGCNDIIVENWGDSPLSMLPIYQELLEGGIKIWVFSGDTDSVVPVTASRYSVGALNLSTIANWYAWYDNGEVGGWSQVYEGLTLVTVRGAGHEVPLHKPRQGLVLFKSFLENEHMPLPSESKLTGPTRSLDNNIRLARPNRKITMPSSMQGTTS 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g01428 497 Gene3D - 314 351 - -
Pumo1g01428 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 193 IPR001563 GO:0004185|GO:0006508
Pumo1g01428 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Pumo1g01428 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Pumo1g01428 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Pumo1g01428 497 ProSitePatterns Serine carboxypeptidases, serine active site. 182 189 IPR018202 GO:0004185
Pumo1g01428 497 ProSitePatterns Serine carboxypeptidases, histidine active site. 425 442 IPR033124 GO:0004185
Pumo1g01428 497 FunFam Carboxypeptidase 311 458 - -
Pumo1g01428 497 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 442 IPR001563 GO:0004185|GO:0006508
Pumo1g01428 497 Gene3D - 361 454 - -
Pumo1g01428 497 FunFam Carboxypeptidase 361 455 - -
Pumo1g01428 497 SUPERFAMILY alpha/beta-Hydrolases 31 458 IPR029058 -
Pumo1g01428 497 FunFam Carboxypeptidase 30 292 - -
Pumo1g01428 497 Pfam Serine carboxypeptidase 40 455 IPR001563 GO:0004185|GO:0006508
Pumo1g01428 497 Gene3D alpha/beta hydrolase 30 292 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g01428 Pumo-Chr1 23423661 23427759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g01428 324 456 Calmodulin-binding Proteins AT2G22960 26.866 6.15e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g01428 K16297 - gmx:100796815 922.154